GeneCloudOmics: A Data Analytic Cloud Platform for High-Throughput Gene Expression Analysis. - Mohamed Helmy; Rahul Agrawal; Javed Ali; Mohamed Soudy; Thuy Tien Bui; Kumar Selvarajoo (Frontiers Bioinform., 2021)

Insights into few shot learning approaches for image scene classification. - Mohamed Soudy; Yasmine M. Afify; Nagwa L. Badr (PeerJ Comput. Sci., 2021)

GenericConv: A Generic Model for Image Scene Classification Using Few-Shot Learning. - Mohamed Soudy; Yasmine M. Afify; Nagwa L. Badr (Inf., 2022)

Bioinformatics approaches for studying molecular sex differences in complex diseases. - Rebecca Ting Jiin Loo; Mohamed Soudy; Francesco Nasta; Mirco Macchi; Enrico Glaab (Briefings Bioinform., 2024)

Comparative evaluation of multiomics integration tools for the study of prediabetes: insights into the earliest stages of type 2 diabetes mellitus. - Mohamed Emam; Ahmed Tarek; Mohamed Soudy; Agostinho Antunes; Mohamed El-Hadidi; Mohamed Hamed (Netw. Model. Anal. Health Informatics Bioinform., 2024)

Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction. - Hazem Alsamkary; Mohamed Elshaffei; Mohamed Soudy; Sara Ossman; Abdallah Amr; Nehal Adel Abdelsalam; Mohamed Elkerdawy; Ahmed Elnaggar (CoRR, 2025)