Lower Bounds on the Complexity of the Wavelength-Based Machine. - Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi (UCNC, 2012)

Light Ray Concentration Reduces the Complexity of the Wavelength-Based Machine on PSPACE Languages. - Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi (UCNC, 2013)

Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Bahram Goliaei (IWBBIO, 2014)

On the complexity of nonuniform wavelength-based machine. - Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi (Nat. Comput., 2014)

Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach. - Mohammad-Hadi Foroughmand-Araabi; Bahram Goliaei; Kasra Alishahi; Mehdi Sadeghi; Sama Goliaei (J. Bioinform. Comput. Biol., 2015)

Computational Complexity of Wavelength-Based Machine with Slightly Interacting Sets. - Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi (Int. J. Unconv. Comput., 2017)

An Intrinsically Universal Family of Signal Machines. - Florent Becker; Jérôme Durand-Lose; Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei (CoRR, 2018)

An O(log1.5n log log n) Approximation Algorithm for Mean Isoperimetry and Robust k-means. - Morteza Alimi; Amir Daneshgar; Mohammad-Hadi Foroughmand-Araabi (CoRR, 2018)

Modeling the probability distribution of the bacterial burst size via a game-theoretic approach. - Seyed Amir Malekpour; Parsa Pakzad; Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Ruzbeh Tusserkani; Bahram Goliaei; Mehdi Sadeghi (J. Bioinform. Comput. Biol., 2018)

A novel pattern matching algorithm for genomic patterns related to protein motifs. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Bahram Goliaei (J. Bioinform. Comput. Biol., 2020)

Conifer: clonal tree inference for tumor heterogeneity with single-cell and bulk sequencing data. - Leila Baghaarabani; Sama Goliaei; Mohammad-Hadi Foroughmand-Araabi; Seyed Peyman Shariatpanahi; Bahram Goliaei (BMC Bioinform., 2021)

Abstract Geometrical Computation 10: An Intrinsically Universal Family of Signal Machines. - Florent Becker; Tom Besson; Jérôme Durand-Lose; Aurélien Emmanuel; Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Shahrzad Heydarshahi (ACM Trans. Comput. Theory, 2021)

Scelestial: Fast and accurate single-cell lineage tree inference based on a Steiner tree approximation algorithm. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Alice C. McHardy (PLoS Comput. Biol., 2022)

Mean isoperimetry with control on outliers: Exact and approximation algorithms. - Morteza Alimi; Amir Daneshgar; Mohammad-Hadi Foroughmand-Araabi (Theor. Comput. Sci., 2022)

An Approximation Algorithm for Ancestral Maximum-Likelihood and Phylogeography Inference Problems under Time Reversible Markov Evolutionary Models. - Mohammad-Hadi Foroughmand-Araabi; Sama Goliaei; Kasra Alishahi (CoRR, 2023)

Weighted centroid trees: a general approach to summarize phylogenies in single-labeled tumor mutation tree inference. - Hamed Vasei; Mohammad-Hadi Foroughmand-Araabi; Amir Daneshgar (Bioinform., 2024)