NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. - Mohammad Ruhul Amin; Steven Skiena; Michael C. Schatz (ICCABS, 2016)

DeepAnnotator: Genome Annotation with Deep Learning. - Mohammad Ruhul Amin; Alisa Yurovsky; Yingtao Tian; Steven Skiena (BCB, 2018)

CADENCE: Conditional Anomaly Detection for Events Using Noise-Contrastive Estimation. - Mohammad Ruhul Amin; Pranav Garg 001; Baris Coskun (AISec@CCS, 2019)

Towards Multi-Wheel Input Device for Non-Visual Interaction. - Noushad Sojib; Syed Masum Billah; Mohammad Ruhul Amin (UIST (Adjunct Volume), 2020)

SentNoB: A Dataset for Analysing Sentiment on Noisy Bangla Texts. - Khondoker Ittehadul Islam; Sudipta Kar; Md Saiful Islam; Mohammad Ruhul Amin (EMNLP (Findings), 2021)

Observing the Unobserved: A Newspaper Based Dengue Surveillance System for the Low-Income Regions of Bangladesh. - Nazia Tasnim; Md. Istiak Hossain Shihab; Moqsadur Rahman; Jillur Rahman Saurav; Sheikh Rabiul Islam; Mohammad Ruhul Amin (FLAIRS, 2021)

Emergence of Polarization and Marginalization in Online Education System of Bangladesh Due to COVID-19: Challenges and Policies to Ensure Inclusive Education. - Md Montaser Hamid; Tanvir Alam; Md Forhad Rabbi; Khalad Hasan; Anastasia Kuzminykh; Mohammad Ruhul Amin (HCI (19), 2021)

A Comparative Study of Language Dependent Gender Bias in the Online Newspapers of Conservative, Semi-conservative and Western Countries. - Jillur Rahman Saurav; Kezheng Xiang; Nikhil Deb; Mohammad Ruhul Amin (HCI (37), 2021)

Identification of Hate Tweets: Which Words Matter the Most? - Kezheng Xiang; Zixing Zhang 004; Yuwen Yu; Luis San Lucas; Mohammad Ruhul Amin; Yanjun Li (HCI (41), 2021)

COVID19α: Interactive Spatio-Temporal Visualization of COVID-19 Symptoms through Tweet Analysis. - Biddut Sarker Bijoy; Syeda Jannatus Saba; Souvika Sarkar; Md. Saiful Islam 007; Sheikh Rabiul Islam; Mohammad Ruhul Amin; Shubhra Kanti Karmaker Santu (IUI Companion, 2021)

Syntax and Themes: How Context Free Grammar Rules and Semantic Word Association Influence Book Success. - Henry Gorelick; Biddut Sarker Bijoy; Syeda Jannatus Saba; Sudipta Kar; Md Saiful Islam; Mohammad Ruhul Amin (RANLP, 2021)

A Study on Using Semantic Word Associations to Predict the Success of a Novel. - Syeda Jannatus Saba; Biddut Sarker Bijoy; Henry Gorelick; Sabir Ismail; Md Saiful Islam; Mohammad Ruhul Amin (*SEM, 2021)

Fighting Against Fake News During Pandemic Era: Does Providing Related News Help Student Internet Users to Detect COVID-19 Misinformation? - Borhan Uddin; Nahid Reza; Md Saiful Islam; Hasib Ahsan; Mohammad Ruhul Amin (WebSci, 2021)

Exploring the Scope and Potential of Local Newspaper-based Dengue Surveillance in Bangladesh. - Nazia Tasnim; Md. Istiak Hossain Shihab; Moqsadur Rahman; Sheikh Rabiul Islam; Mohammad Ruhul Amin (CoRR, 2021)

HS-BAN: A Benchmark Dataset of Social Media Comments for Hate Speech Detection in Bangla. - Nauros Romim; Mosahed Ahmed; Md Saiful Islam; Arnab Sen Sharma; Hriteshwar Talukder; Mohammad Ruhul Amin (CoRR, 2021)

Data-Driven Estimation of Effectiveness of COVID-19 Non-pharmaceutical Intervention Policies. - Yash Mahajan; Sheikh Rabiul Islam; Mohammad Ruhul Amin; Shubhra Kanti Karmaker Santu (IEEE Big Data, 2022)

Connecting Mental Health with Sustainable Development Goals: Insights from Call Data of a Telephone Crisis Helpline in Bangladesh. - Ananya Bhattacharjee; Mohammad Ruhul Amin; Yeshim Iqbal; Syed Ishtiaque Ahmed (ICTD, 2022)

BD-SHS: A Benchmark Dataset for Learning to Detect Online Bangla Hate Speech in Different Social Contexts. - Nauros Romim; Mosahed Ahmed; Md Saiful Islam; Arnab Sen Sharma; Hriteshwar Talukder; Mohammad Ruhul Amin (LREC, 2022)

Situating Public Speaking: The Politics and Poetics of the Digital Islamic Sermons in Bangladesh. - Mohammad Rashidujjaman Rifat; Mohammad Ruhul Amin; Syed Ishtiaque Ahmed (Proc. ACM Hum. Comput. Interact., 2022)

BanLemma: A Word Formation Dependent Rule and Dictionary Based Bangla Lemmatizer. - Sadia Afrin; Md. Shahad Mahmud Chowdhury; Md. Ekramul Islam; Faisal Ahamed Khan; Labib Imam Chowdhury; Md. Motahar Mahtab; Nazifa Nuha Chowdhury; Massud Forkan; Neelima Kundu; Hakim Arif; Mohammad Mamun Or Rashid; Mohammad Ruhul Amin; et al. (EMNLP (Findings), 2023)

Augmenting Online Classes with an Attention Tracking Tool May Improve Student Engagement. - Arnab Sen Sharma; Mohammad Ruhul Amin; Muztaba Fuad (HCI (30), 2023)

SentiGOLD: A Large Bangla Gold Standard Multi-Domain Sentiment Analysis Dataset and Its Evaluation. - Md. Ekramul Islam; Labib Chowdhury; Faisal Ahamed Khan; Shazzad Hossain; Md. Sourave Hossain; Mohammad Mamun Or Rashid; Nabeel Mohammed; Mohammad Ruhul Amin (KDD, 2023)

B-NER: A Novel Bangla Named Entity Recognition Dataset With Largest Entities and Its Baseline Evaluation. - Md. Zahidul Haque Alvi; Sakib Zaman; Jillur Rahman Saurav; Summit Haque; Md. Saiful Islam 007; Mohammad Ruhul Amin (IEEE Access, 2023)

"What's the Point of Having This Conversation?": From a Telephone Crisis Helpline in Bangladesh to the Decolonization of Mental Health Services. - Ananya Bhattacharjee; Sharifa Sultana; Mohammad Ruhul Amin; Yeshim Iqbal; Syed Ishtiaque Ahmed (ACM J. Comput. Sustain. Soc., 2023)

Ad-Hoc Monitoring of COVID-19 Global Research Trends for Well-Informed Policy Making. - Souvika Sarkar; Biddut Sarker Bijoy; Syeda Jannatus Saba; Dongji Feng; Yash Mahajan; Mohammad Ruhul Amin; Sheikh Rabiul Islam; Shubhra Kanti Karmaker Santu (ACM Trans. Intell. Syst. Technol., 2023)

Galangin for COVID-19 and Mucormycosis co-infection: a potential therapeutic strategy of targeting critical host signal pathways triggered by SARS-CoV-2 and Mucormycosis. - Md Imran Hasan; Md. Arju Hossain; Md. Habibur Rahman; Md. Sohel; Asif Ahsan; Sadat Hossain Soikot; Md. Nazrul Islam; Mohammad Ruhul Amin; Deepak Kumar Jain 001 (Netw. Model. Anal. Health Informatics Bioinform., 2023)

Empowering Meta-Analysis: Leveraging Large Language Models for Scientific Synthesis. - Jawad Ibn Ahad; Rafeed Mohammad Sultan; Abraham Kaikobad; Fuad Rahman 001; Mohammad Ruhul Amin; Nabeel Mohammed; Shafin Rahman (IEEE Big Data, 2024)

BanglaDialecto: An End-to-End AI-Powered Regional Speech Standardization. - Md. Nazmus Sadat Samin; Jawad Ibn Ahad; Tanjila Ahmed Medha; Fuad Rahman 001; Mohammad Ruhul Amin; Nabeel Mohammed; Shafin Rahman (IEEE Big Data, 2024)

Data, Annotation, and Meaning-Making: The Politics of Categorization in Annotating a Dataset of Faith-based Communal Violence. - Mohammad Rashidujjaman Rifat; Abdullah Hasan Safir; Sourav Saha; Jahedul Alam Junaed; Maryam Saleki; Mohammad Ruhul Amin; Syed Ishtiaque Ahmed (FAccT, 2024)

Beyond Labels: Aligning Large Language Models with Human-Like Reasoning. - Muhammad Rafsan Kabir; Rafeed Mohammad Sultan; Ihsanul Haque Asif; Jawad Ibn Ahad; Fuad Rahman 001; Mohammad Ruhul Amin; Nabeel Mohammed; Shafin Rahman (ICPR (6), 2024)

Wheeler: A Three-Wheeled Input Device for Usable, Efficient, and Versatile Non-Visual Interaction. - Md. Touhidul Islam; Noushad Sojib; Imran Kabir; Ashiqur Rahman Amit; Mohammad Ruhul Amin; Syed Masum Billah (UIST, 2024)

Demonstration of Wheeler: A Three-Wheeled Input Device for Usable, Efficient, and Versatile Non-Visual Interaction. - Md. Touhidul Islam; Noushad Sojib; Imran Kabir; Ashiqur Rahman Amit; Mohammad Ruhul Amin; Syed Masum Billah (UIST (Adjunct Volume), 2024)

Breaking Free Transformer Models: Task-specific Context Attribution Promises Improved Generalizability Without Fine-tuning Pre-trained LLMs. - Stepan Tytarenko; Mohammad Ruhul Amin (CoRR, 2024)

Boosting Sentiment Analysis in Persian through a GAN-Based Synthetic Data Augmentation Method. - Masoumeh Mohammadi; Mohammad Ruhul Amin; Shadi Tavakoli (COLING Workshops, 2025)

Influencing the Role of GPT-Generated Responses in Shaping Gender Perceptions: Insights from the Middle East and Beyond. - Maryam Saleki; Mohammad Ruhul Amin (HCI (7), 2025)

BanNERD: A Benchmark Dataset and Context-Driven Approach for Bangla Named Entity Recognition. - Md. Motahar Mahtab; Faisal Ahamed Khan; Md. Ekramul Islam; Md. Shahad Mahmud Chowdhury; Labib Imam Chowdhury; Sadia Afrin; Hazrat Ali; Mohammad Mamun Or Rashid; Nabeel Mohammed; Mohammad Ruhul Amin (NAACL (Findings), 2025)

LegalRAG: A Hybrid RAG System for Multilingual Legal Information Retrieval. - Muhammad Rafsan Kabir; Rafeed Mohammad Sultan; Fuad Rahman 001; Mohammad Ruhul Amin; Sifat Momen; Nabeel Mohammed; Shafin Rahman (CoRR, 2025)