G-rich VEGF aptamer as a potential inhibitor of chitin trafficking signal in emerging opportunistic yeast infection. - Mohammad Vahed; Gholamreza Ahmadian; Niyoosha Ameri; Majid Vahed (Comput. Biol. Chem., 2019)

The initial stage of structural transformation of Aβ42 peptides from the human and mole rat in the presence of Fe2+ and Fe3+: Related to Alzheimer's disease. - Mohammad Vahed; Aaron Sweeney; Hiroshi Shirasawa; Majid Vahed (Comput. Biol. Chem., 2019)

BML: a versatile web server for bipartite motif discovery. - Mohammad Vahed; Majid Vahed; Lana X. Garmire (Briefings Bioinform., 2022)

T-Ridership: A web tool for reprogramming public transportation fleets to minimize COVID-19 transmission. - Saba Imani; Majid Vahed; Shreya Satodia; Mohammad Vahed (SoftwareX, 2023)

Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing. - Kerui Peng; Theodore S. Nowicki; Katie Campbell; Mohammad Vahed; Dandan Peng; Yiting Meng; Anish Nagareddy; Yu-Ning Huang; Aaron Karlsberg; Zachary Miller; Jaqueline J. Brito; Brian B. Nadel; et al. (Briefings Bioinform., 2023)

Response to 'comment on rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing' by Davydov A.N.; Bolotin D.A.; Poslavsky S. V. and Chudakov D.M. - Yu-Ning Huang; Mohammad Vahed; Kerui Peng; Houda Alachkar; Serghei Mangul (Briefings Bioinform., 2023)

Analytical code sharing practices in biomedical research. - Nitesh Kumar Sharma; Ram Ayyala; Dhrithi Deshpande; Yesha Patel; Viorel Munteanu; Dumitru Ciorba; Viorel Bostan; Andrada Fiscutean; Mohammad Vahed; Aditya Sarkar; Ruiwei Guo; Andrew Moore; et al. (PeerJ Comput. Sci., 2024)