DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation. - Nabeel Khalid; Mohammadmahdi Koochali; Vikas Rajashekar; Mohsin Munir; Christoffer Edlund; Timothy R. Jackson; Johan Trygg; Rickard Sjögren; Andreas Dengel 001; Sheraz Ahmed (BHI, 2022)

Point2Mask: A Weakly Supervised Approach for Cell Segmentation Using Point Annotation. - Nabeel Khalid; Fabian Schmeisser; Mohammadmahdi Koochali; Mohsin Munir; Christoffer Edlund; Timothy R. Jackson; Johan Trygg; Rickard Sjögren; Andreas Dengel 001; Sheraz Ahmed (MIUA, 2022)

CellGenie: An End-to-End Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images. - Nabeel Khalid; Mohammadmahdi Koochali; Duway Nicolas Lesmes-Leon; Maria Caroprese; Gillian Lovell; Daniel A. Porto; Johan Trygg; Andreas Dengel 001; Sheraz Ahmed (MIUA (1), 2024)

SAT: Segment and Track Anything for Microscopy. - Nabeel Khalid; Mohammadmahdi Koochali; Khola Naseem; Maria Caroprese; Gillian Lovell; Daniel A. Porto; Johan Trygg; Andreas Dengel 001; Sheraz Ahmed (ICAART (2), 2025)