Effects of partial reporting of classification results. - Mohammadmahdi R. Yousefi; Jianping Hua; Chao Sima; Edward R. Dougherty (GENSiPS, 2010)

Reporting bias when using real data sets to analyze classification performance. - Mohammadmahdi R. Yousefi; Jianping Hua; Chao Sima; Edward R. Dougherty (Bioinform., 2010)

Optimal intervention strategies for cyclic therapeutic methods with fixed-length duration of effect. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (ACSCC, 2011)

Modeling cyclic and acyclic therapeutic methods with persistent intervention effect in probabilistic Boolean networks. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (GENSiPS, 2011)

Multiple-rule bias in the comparison of classification rules. - Mohammadmahdi R. Yousefi; Jianping Hua; Edward R. Dougherty (Bioinform., 2011)

Optimal therapeutic methods with random-length response in probabilistic boolean networks. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (GENSiPS, 2012)

Optimal cancer therapy based on a tumor growth inhibition model. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (SSP, 2012)

Performance reproducibility index for classification. - Mohammadmahdi R. Yousefi; Edward R. Dougherty (Bioinform., 2012)

Optimal Intervention Strategies for Therapeutic Methods With Fixed-Length Duration of Drug Effectiveness. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (IEEE Trans. Signal Process., 2012)

Bayesian optimal control of Markovian genetic regulatory networks. - Mohammadmahdi R. Yousefi; Edward R. Dougherty (ACSSC, 2013)

Compromised intervention policies for phenotype alteration. - Mohammadmahdi R. Yousefi (GENSiPS, 2013)

Optimal control of gene regulatory networks with uncertain intervention effects. - Mohammadmahdi R. Yousefi; Ivan Ivanov 001 (GlobalSIP, 2013)

Intervention in gene regulatory networks with maximal phenotype alteration. - Mohammadmahdi R. Yousefi; Edward R. Dougherty (Bioinform., 2013)

Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification. - Noushin Ghaffari; Mohammadmahdi R. Yousefi; Charles D. Johnson; Ivan Ivanov 001; Edward R. Dougherty (BMC Bioinform., 2013)

Optimal Intervention in Markovian Gene Regulatory Networks With Random-Length Therapeutic Response to Antitumor Drug. - Mohammadmahdi R. Yousefi; Aniruddha Datta; Edward R. Dougherty (IEEE Trans. Biomed. Eng., 2013)

Optimal Bayesian cancer prognosis with model-constrained robust intervention. - Lori A. Dalton; Mohammadmahdi R. Yousefi (GlobalSIP, 2014)

A comparison study of optimal and suboptimal intervention policies for gene regulatory networks in the presence of uncertainty. - Mohammadmahdi R. Yousefi; Edward R. Dougherty (EURASIP J. Bioinform. Syst. Biol., 2014)

On optimal Bayesian classification and risk estimation under multiple classes. - Lori A. Dalton; Mohammadmahdi R. Yousefi (EURASIP J. Bioinform. Syst. Biol., 2015)

Optimal cancer prognosis under network uncertainty. - Mohammadmahdi R. Yousefi; Lori A. Dalton (EURASIP J. Bioinform. Syst. Biol., 2015)

On the limits of data-driven cancer prognosis prediction. - Mohammadmahdi R. Yousefi; Lori A. Dalton (BHI, 2016)

GPU acceleration for Bayesian control of Markovian genetic regulatory networks. - He Zhou; Jiang Hu; Sunil P. Khatri; Frank Liu 001; Cliff C. N. Sze; Mohammadmahdi R. Yousefi (BHI, 2016)