Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN. - Mohammadsaleh Refahi; Gavin L. A. Hearne; Harrison Muller; Kieran Lynch; Bahrad A. Sokhansanj; James R. Brown; Gail Rosen (BCB Companion, 2025)

Context-Aware Regularization with Markovian Integration for Attention-Based Nucleotide Analysis. - Mohammadsaleh Refahi; Mahdi Abavisani; Bahrad A. Sokhansanj; James R. Brown; Gail Rosen (NeurIPS, 2025)