EMASGRID: An NBBnet Grid Initiative for a Bioinformatics and Computational Biology Services Infrastructure in Malaysia. - Mohd Firdaus Raih; Mohd Yunus Sharum; Raja Murzaferi Raja Moktar; Mohd Noor Mat Isa; Ng Lip Kian; Nor Muhammad Mahadi; Rahmah Mohamed (LSGRID, 2004)

Novel base triples in RNA structures revealed by graph theoretical searching methods. - Mohd Firdaus Raih; Anne-Marie Harrison; Peter Willett 002; Peter J. Artymiuk (BMC Bioinform., 2011)

NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules. - Hazrina Yusof Hamdani; Sri Devan Appasamy; Peter Willett 002; Peter J. Artymiuk; Mohd Firdaus Raih (Nucleic Acids Res., 2012)

SPRITE and ASSAM: web servers for side chain 3D-motif searching in protein structures. - Nurul Nadzirin; Eleanor J. Gardiner; Peter Willett 002; Peter J. Artymiuk; Mohd Firdaus Raih (Nucleic Acids Res., 2012)

IMAAAGINE: a webserver for searching hypothetical 3D amino acid side chain arrangements in the Protein Data Bank. - Nurul Nadzirin; Peter Willett 002; Peter J. Artymiuk; Mohd Firdaus Raih (Nucleic Acids Res., 2013)

COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures. - Mohd Firdaus Raih; Hazrina Yusof Hamdani; Nurul Nadzirin; Effirul Ikhwan Ramlan; Peter Willett 002; Peter J. Artymiuk (Nucleic Acids Res., 2014)

Reconstructing gene regulatory networks from knock-out data using Gaussian Noise Model and Pearson Correlation Coefficient. - Faridah Hani Mohamed Salleh; Shereena Mohd Arif; Suhaila Zainudin; Mohd Firdaus Raih (Comput. Biol. Chem., 2015)

An analysis of simple computational strategies to facilitate the design of functional molecular information processors. - Yiling Lee; Rozieffa Roslan; Shariza Azizan; Mohd Firdaus Raih; Effirul I. Ramlan (BMC Bioinform., 2016)

InterRNA: a database of base interactions in RNA structures. - Sri Devan Appasamy; Hazrina Yusof Hamdani; Effirul Ikhwan Ramlan; Mohd Firdaus Raih (Nucleic Acids Res., 2016)

Seqping: gene prediction pipeline for plant genomes using self-training gene models and transcriptomic data. - Kuang-Lim Chan; Rozana Rosli; Tatiana V. Tatarinova; Michael Hogan; Mohd Firdaus Raih; Eng-Ti Leslie Low (BMC Bioinform., 2017)

Computational discovery and annotation of conserved small open reading frames in fungal genomes. - Shuhaila Mat-Sharani; Mohd Firdaus Raih (BMC Bioinform., 2019)

Drug ReposER: a web server for predicting similar amino acid arrangements to known drug binding interfaces for potential drug repositioning. - Nur Syatila Abdul Ghani; Effirul Ikhwan Ramlan; Mohd Firdaus Raih (Nucleic Acids Res., 2019)

Computational Prediction of Nucleic Acid Binding Residues From Sequence. - Nur S. A. Ghani; Mohd Firdaus Raih; Shandar Ahmad (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Predicting RNA-RNA Interactions in Three-Dimensional Structures. - Hazrina Yusof Hamdani; Zatil H. Yahaya; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Structural Genomics. - Shuhaila Mat-Sharani; Doris H. X. Quay; Chyan Leong Ng; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Applications of Ribosomal RNA Sequence and Structure Analysis for Extracting Evolutionary and Functional Insights. - Chyan Leong Ng; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Computational Design and Experimental Implementation of Synthetic Riboswitches and Riboregulators. - Munyati Othman; Siuk M. Ng; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Identifying Functional Relationships Via the Annotation and Comparison of Three-Dimensional Amino Acid Arrangements in Protein Structures. - Mohd Firdaus Raih; Nur Syatila Abdul Ghani (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Engineering of Supramolecular RNA Structures. - Effirul I. Ramlan; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

Inference of Horizontal Gene Transfer: Gaining Insights Into Evolution via Lateral Acquisition of Genetic Material. - Suhaila Sulaiman; Nur S. Yusoff; Ng S. Mun; Haslina Makmur; Mohd Firdaus Raih (Encyclopedia of Bioinformatics and Computational Biology (3), 2019)

GrAfSS: a webserver for substructure similarity searching and comparisons in the structures of proteins and RNA. - Nur Syatila Abdul Ghani; Reeki Emrizal; Sabrina Mohamed Moffit; Hazrina Yusof Hamdani; Effirul Ikhwan Ramlan; Mohd Firdaus Raih (Nucleic Acids Res., 2022)