Unravelling Prion Diseases Using Molecular Dynamics Simulations. - Mohd Shahir Shamsir; Zeti-Azura Mohamed-Hussein; Johan Sharif (Asia International Conference on Modelling and Simulation, 2008)

Distributed Computing Jobs Scheduling Improvement Using Simulated Annealing Optimizer. - Zafril Rizal M. Azmi; Kamalrulnizam Abu Bakar; Abdul Hanan Abdullah; Mohd Shahir Shamsir (UKSim, 2009)

Bioinformatics in Malaysia: Hope, Initiative, Effort, Reality, and Challenges. - Azura M. H. Zeti; Mohd Shahir Shamsir; Khairina Tajul-Arifin; Amir F. Merican; Rahmah Mohamed; Sheila Nathan; Nor Muhammad Mahadi; Suhaimi Napis; Tin Wee Tan (PLoS Comput. Biol., 2009)

Grid Jobs Scheduling Improvement Using Priority Rules and Backfilling. - Zafril Rizal M. Azmi; Kamalrulnizam Abu Bakar; Abdul Hanan Abdullah; Mohd Shahir Shamsir; Rahiwan Nazar Romli; Syahrizal Azmir M. D. Sharif (ICSECS (1), 2011)

birgHPC: creating instant computing clusters for bioinformatics and molecular dynamics. - Teong Han Chew; Kwee Hong Joyce-Tan; Farizuwana Akma; Mohd Shahir Shamsir (Bioinform., 2011)

Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway. - Chuii Khim Chong; Mohd Saberi Mohamad; Safaai Deris; Mohd Shahir Shamsir; Afnizanfaizal Abdullah; Yee Wen Choon; Lian En Chai; Sigeru Omatu 001 (DCAI, 2012)

CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures. - Hamed Bostan; Naomie Salim; Zeti-Azura Mohamed-Hussein; Peter Klappa; Mohd Shahir Shamsir (Adv. Bioinformatics, 2012)

Improved Differential Evolution Algorithm for Parameter Estimation to Improve the Production of Biochemical Pathway. - Chuii Khim Chong; Mohd Saberi Mohamad; Safaai Deris; Mohd Shahir Shamsir; Yee Wen Choon; Lian En Chai (Int. J. Interact. Multim. Artif. Intell., 2012)

Structural prediction of a novel chitinase from the psychrophilic Glaciozyma antarctica PI12 and an analysis of its structural properties and function. - Aizi Nor Mazila Ramli; Nor Muhammad Mahadi; Mohd Shahir Shamsir; Amir Rabu; Kwee Hong Joyce-Tan; Abdul Munir Abdul Murad; Rosli Md. Illias (J. Comput. Aided Mol. Des., 2012)

Using Particle Swarm Optimization for Estimating Kinetics Parameters on Essential Amino Acid Production of Arabidopsis Thaliana. - Siew Teng Ng; Chuii Khim Chong; Yee Wen Choon; Lian En Chai; Safaai Deris; Rosli Md. Illias; Mohd Shahir Shamsir; Mohd Saberi Mohamad (BDI, 2013)

Using Ant Colony Optimization (ACO) on Kinetic Modeling of the Acetoin Production in Lactococcus Lactis C7. - Nor Farhah Binti Saidin; Chuii Khim Chong; Yee Wen Choon; Lian En Chai; Safaai Deris; Rosli Md. Illias; Mohd Shahir Shamsir; Mohd Saberi Mohamad (BDI, 2013)

Threonine Biosynthesis Pathway Simulation Using IBMDE with Parameter Estimation. - Chuii Khim Chong; Mohd Saberi Mohamad; Safaai Deris; Mohd Shahir Shamsir; Yee Wen Choon; Lian En Chai (PAKDD Workshops, 2013)

Improving Molecular Dynamics Simulation Performance on Low-Cost Systems. - Teong Han Chew; Kwee Hong Joyce-Tan; Zeti-Azura Mohamed-Hussein; Pek Iee Elizabeth-Chia; Mohd Shahir Shamsir (Comput. Sci. Eng., 2013)

An improved differential evolution algorithm for enhancing biochemical pathways simulation and production. - Chuii Khim Chong; Mohd Saberi Mohamad; Safaai Deris; Mohd Shahir Shamsir; Afnizanfaizal Abdullah (Int. J. Data Min. Bioinform., 2014)

Structural and functional analysis of a novel psychrophilic β-mannanase from Glaciozyma antarctica PI12. - Sepideh Parvizpour; Jafar Razmara; Aizi Nor Mazila Ramli; Rosli Md. Illias; Mohd Shahir Shamsir (J. Comput. Aided Mol. Des., 2014)

Weighted voting-based consensus clustering for chemical structure databases. - Faisal Saeed; Ali Ahmed 003; Mohd Shahir Shamsir; Naomie Salim (J. Comput. Aided Mol. Des., 2014)

Identification of putative drug targets for human sperm-egg interaction defect using protein network approach. - Soudabeh Sabetian; Mohd Shahir Shamsir (BMC Syst. Biol., 2015)

Prediction of recombinant protein overexpression in Escherichia coli using a machine learning based model (RPOLP). - Narjeskhatoon Habibi; Alireza Norouzi; Siti Zaiton Mohd Hashim; Mohd Shahir Shamsir; Razip Samian (Comput. Biol. Medicine, 2015)

Model-guided metabolic gene knockout of gnd for enhanced succinate production in Escherichia coli from glucose and glycerol substrates. - Bashir Sajo Mienda; Mohd Shahir Shamsir; Rosli Md. Illias (Comput. Biol. Chem., 2016)

Deciphering the catalytic amino acid residues of l-2-haloacid dehalogenase (DehL) from Rhizobium sp. RC1: An in silico analysis. - Aliyu Adamu; Roswanira Abdul Wahab; Mohd Shahir Shamsir; Firdausi Aliyu; Fahrul Huyop (Comput. Biol. Chem., 2017)