ClusterEnG: an interactive educational web resource for clustering and visualizing high-dimensional data. - Mohith Manjunath; Yi Zhang 055; Yeonsung Kim; Steve H. Yeo; Omar Sobh; Nathan Russell; Christian Followell; Colleen Bushell; Umberto Ravaioli; Jun S. Song (PeerJ Comput. Sci., 2018)

SequencEnG: an interactive knowledge base of sequencing techniques. - Yi Zhang 055; Mohith Manjunath; Yeonsung Kim; Joerg Heintz; Jun S. Song (Bioinform., 2019)

Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. - Brittany Baur; Junha Shin; Jacob Schreiber; Shilu Zhang; Yi Zhang 055; Mohith Manjunath; Jun S. Song; William Stafford Noble; Sushmita Roy (PLoS Comput. Biol., 2023)