AEGS: identifying aberrantly expressed gene sets for differential variability analysis. - Jinting Guan; Moliang Chen; Congting Ye; James J. Cai; Guoli Ji (Bioinform., 2018)

TSAPA: identification of tissue-specific alternative polyadenylation sites in plants. - Guoli Ji; Moliang Chen; Wenbin Ye 002; Sheng Zhu; Congting Ye; Yaru Su; Haonan Peng; Xiaohui Wu (Bioinform., 2018)

AStrap: identification of alternative splicing from transcript sequences without a reference genome. - Guoli Ji; Wenbin Ye 002; Yaru Su; Moliang Chen; Guangzao Huang; Xiaohui Wu (Bioinform., 2019)

A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data. - Moliang Chen; Guoli Ji; Hongjuan Fu; Qianmin Lin; Congting Ye; Wenbin Ye 002; Yaru Su; Xiaohui Wu (Briefings Bioinform., 2020)