Computational Identification of Regulatory Factors Involved in MicroRNA Transcription. - Praveen Sethupathy; Molly Megraw; M. Inmaculada Barrasa; Artemis G. Hatzigeorgiou (Panhellenic Conference on Informatics, 2005)

Support Vector Machines for Predicting microRNA Hairpins. - Karol Szafranski; Molly Megraw; Martin Reczko; Artemis G. Hatzigeorgiou (BIOCOMP, 2006)

miRGen: a database for the study of animal microRNA genomic organization and function. - Molly Megraw; Praveen Sethupathy; Benoit Corda; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2007)

miRGen 2.0: a database of microRNA genomic information and regulation. - Panagiotis Alexiou; Thanasis Vergoulis; Martin Gleditzsch; George Prekas; Theodore Dalamagas 001; Molly Megraw; Ivo Grosse; Timos K. Sellis; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2010)

TIPR: transcription initiation pattern recognition on a genome scale. - Taj Morton; Weng-Keen Wong; Molly Megraw (Bioinform., 2015)

Convmd: Convolutive Matrix Decomposition For Classification Of Matrix Data. - Phung Lai; Raviv Raich; Molly Megraw (SSP, 2018)

IndeCut evaluates performance of network motif discovery algorithms. - Mitra Ansariola; Molly Megraw; David Koslicki (Bioinform., 2018)

PlantSimLab - a modeling and simulation web tool for plant biologists. - S. Ha; Elena S. Dimitrova; Stefan Hoops; Doaa Altarawy; Mitra Ansariola; D. Deb; Jane Glazebrook; R. Hillmer; Hossameldin Shahin; Fumiaki Katagiri; J. McDowell; Molly Megraw; et al. (BMC Bioinform., 2019)