Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm. - Michio Iwata; Longhao Yuan; Qibin Zhao; Yasuo Tabei; Francois Berenger; Ryusuke Sawada; Sayaka Akiyoshi; Momoko Hamano; Yoshihiro Yamanishi (Bioinform., 2019)

TRANSDIRE: data-driven direct reprogramming by a pioneer factor-guided trans-omics approach. - Ryohei Eguchi; Momoko Hamano; Michio Iwata; Toru Nakamura; Shinya Oki; Yoshihiro Yamanishi (Bioinform., 2022)

Small compound-based direct cell conversion with combinatorial optimization of pathway regulations. - Toru Nakamura; Michio Iwata; Momoko Hamano; Ryohei Eguchi; Jun-ichi Takeshita; Yoshihiro Yamanishi (Bioinform., 2022)

Network-based identification of diagnosis-specific trans-omic biomarkers via integration of multiple omics data. - Md. Mamunur Rashid; Momoko Hamano; Midori Iida; Michio Iwata; Toshiyuki Ko; Seitaro Nomura; Issei Komuro; Yoshihiro Yamanishi (Biosyst., 2024)