Mona Singh
Orcid: 0000-0001-8271-6026Affiliations:
- Princeton University, Lewis-Sigler Institute for Integrative Genomics, Princeton, NJ, USA
According to our database1,
Mona Singh
authored at least 55 papers
between 1990 and 2024.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2019, "For contributions to computational biology, spearheading algorithmic and machine learning approaches for characterizing proteins and their interactions".
Timeline
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Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on acm.org
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on orcid.org
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on id.loc.gov
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on dl.acm.org
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Bibliography
2024
2023
Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers.
PLoS Comput. Biol., March, 2023
2022
Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding Specificities Using Structural Mappings.
Proceedings of the Research in Computational Molecular Biology, 2022
2021
Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections.
PLoS Comput. Biol., 2021
DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction.
Bioinform., 2021
2020
A Guided Network Propagation Approach to Identify Disease Genes that Combines Prior and New Information.
Proceedings of the Research in Computational Molecular Biology, 2020
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2018
Two critical positions in zinc finger domains are heavily mutated in three human cancer types.
PLoS Comput. Biol., 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Proceedings of the Research in Computational Molecular Biology, 2017
2015
PLoS Comput. Biol., 2015
PLoS Comput. Biol., 2015
2014
Bioinform., 2014
2013
From Hub Proteins to Hub Modules: The Relationship Between Essentiality and Centrality in the Yeast Interactome at Different Scales of Organization.
PLoS Comput. Biol., 2013
Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks.
PLoS Comput. Biol., 2013
Computational Assessment of the Cooperativity between RNA Binding Proteins and MicroRNAs in Transcript Decay.
PLoS Comput. Biol., 2013
Disentangling function from topology to infer the network properties of disease genes.
BMC Syst. Biol., 2013
2011
J. Discrete Algorithms, 2011
2010
G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in <i>Saccharomyces cerevisiae</i>.
PLoS Comput. Biol., 2010
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010
2009
Proc. Natl. Acad. Sci. USA, 2009
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.
PLoS Comput. Biol., 2009
<i>M</i> are better than one: an ensemble-based motif finder and its application to regulatory element prediction.
Bioinform., 2009
How and when should interactome-derived clusters be used to predict functional modules and protein function?
Bioinform., 2009
Bioinform., 2009
A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.
Bioinform., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2008
PLoS Comput. Biol., 2008
Characterization and prediction of residues determining protein functional specificity.
Bioinform., 2008
Proceedings of the Protein-protein Interactions and Networks: Identification, 2008
2007
Bioinform., 2007
2006
Algorithms Mol. Biol., 2006
Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006
2005
Solving and analyzing side-chain positioning problems using linear and integer programming.
Bioinform., 2005
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies.
INFORMS J. Comput., 2004
Comparative analysis of methods for representing and searching for transcription factor binding sites.
Bioinform., 2004
A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor.
Bioinform., 2004
2003
The Side-Chain Positioning Problem: A Semidefinite Programming Formulation With New Rounding Schemes.
Proceedings of the PCK50, 2003
2001
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001
1999
1998
Computational learning reveals coiled coil-like motifs in histidine kinase linker domains.
Proc. Natl. Acad. Sci. USA, 1998
1997
J. Comput. Biol., 1997
1995
PhD thesis, 1995
Proceedings of the Eigth Annual Conference on Computational Learning Theory, 1995
1990
Proceedings of the Third Annual Workshop on Computational Learning Theory, 1990