Task-centered Navigation in a Web-accessible Data Space. - Eckehard Doerry; Arthur E. Kirkpatrick; Sarah A. Douglas; Monte Westerfield (WebNet, 1997)

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research. - Judy Sprague; Eckehard Doerry; Sarah A. Douglas; Monte Westerfield (Nucleic Acids Res., 2001)

The Zebrafish Information Network (ZFIN): the zebrafish model organism database. - Judy Sprague; Dave Clements; Tom Conlin; Pat Edwards; Ken Frazer; Kevin Schaper; Erik Segerdell; Peiran Song; Brock Sprunger; Monte Westerfield (Nucleic Acids Res., 2003)

MEPD: a resource for medaka gene expression patterns. - Thorsten Henrich; Mirana Ramialison; Beate Wittbrodt; Beatrice Assouline; Franck Bourrat; Anja Berger; Heinz Himmelbauer; Takashi Sasaki; Nobuyoshi Shimizu; Monte Westerfield; Hisato Kondoh; Joachim Wittbrodt (Bioinform., 2005)

The Zebrafish Information Network: the zebrafish model organism database. - Judy Sprague; Leyla Bayraktaroglu; Dave Clements; Tom Conlin; David Fashena; Ken Frazer; Melissa A. Haendel; Douglas G. Howe; Prita Mani; Sridhar Ramachandran; Kevin Schaper; Erik Segerdell; et al. (Nucleic Acids Res., 2006)

NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models. - Nicole L. Washington; M. Gibson; Chris Mungall; Michael Ashburner; Georgios V. Gkoutos; Monte Westerfield; Melissa A. Haendel; Suzanna E. Lewis (Ontologies and Text Mining for Life Sciences, 2008)

The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. - Judy Sprague; Leyla Bayraktaroglu; Yvonne M. Bradford; Tom Conlin; Nathan A. Dunn; David Fashena; Ken Frazer; Melissa A. Haendel; Douglas G. Howe; Jonathan Knight; Prita Mani; Sierra A. T. Moxon; et al. (Nucleic Acids Res., 2008)

Employing Reasoning within the Phenoscape Knowledgebase. - James P. Balhoff; Wasila M. Dahdul; Hilmar Lapp; Peter E. Midford; Todd J. Vision; Monte Westerfield; Paula M. Mabee (ICBO, 2011)

Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. - Wasila M. Dahdul; James P. Balhoff; Hilmar Lapp; Peter E. Midford; Todd J. Vision; Monte Westerfield; Paula M. Mabee (ICBO, 2011)

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. - Chris Mungall; David Anderson; Anita E. Bandrowski; Brian A. Canada; Andrew Chatr-aryamontri; Keith C. Cheng; P. Michael Conn; Kara Dolinski; Mark H. Ellisman; Janan T. Eppig; Jeffrey S. Grethe; Joseph W. Kemnitz; et al. (ICBO, 2011)

Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. - Todd J. Vision; Judith A. Blake; Hilmar Lapp; Paula M. Mabee; Monte Westerfield (LISC, 2011)

ZFIN: enhancements and updates to the zebrafish model organism database. - Yvonne M. Bradford; Tom Conlin; Nathan A. Dunn; David Fashena; Ken Frazer; Douglas G. Howe; Jonathan Knight; Prita Mani; Ryan Martin; Sierra A. T. Moxon; Holly Paddock; Christian Pich 002; et al. (Nucleic Acids Res., 2011)

PhenoDigm: analyzing curated annotations to associate animal models with human diseases. - Damian Smedley; Anika Oellrich; Sebastian Köhler 001; Barbara J. Ruef; Monte Westerfield; Peter N. Robinson; Suzanna Lewis; Christopher J. Mungall (Database J. Biol. Databases Curation, 2013)

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. - Peter E. Midford; Thomas Dececchi; James P. Balhoff; Wasila M. Dahdul; Nizar Ibrahim; Hilmar Lapp; John G. Lundberg; Paula M. Mabee; Paul C. Sereno; Monte Westerfield; Todd J. Vision; David C. Blackburn (J. Biomed. Semant., 2013)

ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. - Douglas G. Howe; Yvonne M. Bradford; Tom Conlin; Anne E. Eagle; David Fashena; Ken Frazer; Jonathan Knight; Prita Mani; Ryan Martin; Sierra A. T. Moxon; Holly Paddock; Christian Pich 002; et al. (Nucleic Acids Res., 2013)

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. - Ceri E. Van Slyke; Yvonne M. Bradford; Monte Westerfield; Melissa A. Haendel (J. Biomed. Semant., 2014)

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. - Sebastian Köhler 001; Sandra C. Doelken; Christopher J. Mungall; Sebastian Bauer 002; Helen V. Firth; Isabelle Bailleul-Forestier; Graeme C. M. Black; Danielle L. Brown; Michael Brudno; Jennifer Campbell; David R. FitzPatrick; Janan T. Eppig; et al. (Nucleic Acids Res., 2014)

The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. - Douglas G. Howe; Yvonne M. Bradford; Anne E. Eagle; David Fashena; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; Sierra Taylor Moxon; Holly Paddock; Christian Pich 002; Sridhar Ramachandran; et al. (Nucleic Acids Res., 2017)

Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. - Paula M. Mabee; Wasila M. Dahdul; James P. Balhoff; Hilmar Lapp; Prashanti Manda; Josef C. Uyeda; Todd J. Vision; Monte Westerfield (Application of Semantic Technology in Biodiversity Science, 2018)

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. - Leyla Ruzicka; Douglas G. Howe; Sridhar Ramachandran; Sabrina Toro; Ceri E. Van Slyke; Yvonne M. Bradford; Anne E. Eagle; David Fashena; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; et al. (Nucleic Acids Res., 2019)

Alliance of Genome Resources Portal: unified model organism research platform. - Julie Agapite; Laurent-Philippe Albou; Suzi A. Aleksander; Joanna Argasinska; Valerio Arnaboldi; Helen Attrill; Susan M. Bello; Judith A. Blake; Olin Blodgett; Yvonne M. Bradford; Carol J. Bult; Scott Cain; et al. (Nucleic Acids Res., 2020)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

The Zebrafish Information Network: major gene page and home page updates. - Douglas G. Howe; Sridhar Ramachandran; Yvonne M. Bradford; David Fashena; Sabrina Toro; Anne E. Eagle; Ken Frazer; Patrick Kalita; Prita Mani; Ryan Martin; Sierra Taylor Moxon; Holly Paddock; et al. (Nucleic Acids Res., 2021)

Enriched phenotypes in rare variant carriers suggest pathogenic mechanisms in rare disease patients. - Lane Fitzsimmons; Maria T. Acosta; David R. Adams; Ben Afzali; Ali Al-Beshri; Eric Allenspach; Aimee Allworth; Raquel L. Alvarez; Justin Alvey; Ashley Andrews; Euan A. Ashley; Carlos A. Bacino; et al. (BioData Min., 2025)