Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research System. - Daniel Veltri; Zhiwen Li; Sandhya Xirasagar; Andrew J. Oler; Xi Cheng; Ke Huang; Jason Barnett; Lingwen Zhang; Octavio Juarez Espinosa; Yongjie Fan; Morgan Similuk; Magdalena Walkiewicz; et al. (BCB, 2018)

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. - Sebastian Köhler 001; Leigh Carmody; Nicole A. Vasilevsky; Julius O. B. Jacobsen; Daniel Danis; Jean-Philippe F. Gourdine; Michael A. Gargano; Nomi L. Harris; Nicolas Matentzoglu; Julie A. McMurry; David Osumi-Sutherland; Valentina Cipriani; et al. (Nucleic Acids Res., 2019)

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. - Kent A. Shefchek; Nomi L. Harris; Michael A. Gargano; Nicolas Matentzoglu; Deepak R. Unni; Matthew H. Brush; Dan Keith; Tom Conlin; Nicole A. Vasilevsky; Xingmin Aaron Zhang; James P. Balhoff; Larry Babb; et al. (Nucleic Acids Res., 2020)

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. - Ling Luo 001; Shankai Yan; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (Bioinform., 2021)

PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. - Shankai Yan; Ling Luo 001; Li Fang; Daniel Veltri; Andrew J. Oler; Rajarshi Ghosh; Chih-Hsuan Wei; Morgan Similuk; Kai Wang; Zhiyong Lu (AMIA, 2022)

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. - Shankai Yan; Ling Luo 001; Po-Ting Lai; Daniel Veltri; Andrew J. Oler; Sandhya Xirasagar; Rajarshi Ghosh; Morgan Similuk; Peter N. Robinson; Zhiyong Lu (J. Biomed. Informatics, 2022)