Quality Assurance of Bioinformatics Software: A Case Study of Testing a Biomedical Text Processing Tool Using Metamorphic Testing. - Madhusudan Srinivasan; Morteza Pourreza Shahri; Indika Kahanda; Upulee Kanewala (MET@ICSE, 2018)

A look back at the quality of Protein Function Prediction tools in CAFA. - Morteza Pourreza Shahri; Madhusudan Srinivasan; Diane Bimczok; Upulee Kanewala; Indika Kahanda (PeerJ Prepr., 2018)

Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools. - Morteza Pourreza Shahri; Madhusudan Srinivasan; Gillian Reynolds; Diane Bimczok; Indika Kahanda; Upulee Kanewala (AITest, 2019)

PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature. - Morteza Pourreza Shahri; Gillian Reynolds; Mandi Marie Roe; Indika Kahanda (BCB, 2019)

ProPheno: An online dataset for completely characterizing the human protein-phenotype landscape in biomedical literature. - Morteza Pourreza Shahri; Indika Kahanda (PeerJ Prepr., 2019)

An Ensemble Approach for Automatic Structuring of Radiology Reports. - Morteza Pourreza Shahri; Amir Tahmasebi; Bingyang Ye; Henghui Zhu; Javed Aslam; Timothy Ferris (ClinicalNLP@EMNLP, 2020)

ProPheno 1.0: An Online Dataset for Accelerating the Complete Characterization of the Human Protein-Phenotype Landscape in Biomedical Literature. - Morteza Pourreza Shahri; Indika Kahanda (ICSC, 2020)

DeepPPPred: Deep Ensemble Learning with Transformers, Recurrent and Convolutional Neural Networks for Human Protein-Phenotype Co-mention Classification. - Morteza Pourreza Shahri; Katrina Lyon; Julia Schearer; Indika Kahanda (BIBM, 2021)

Deep semi-supervised learning ensemble framework for classifying co-mentions of human proteins and phenotypes. - Morteza Pourreza Shahri; Indika Kahanda (BMC Bioinform., 2021)