The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction. - Moses Stamboulian; Rafael F. Guerrero; Matthew W. Hahn; Predrag Radivojac (Bioinform., 2020)

Model-based and phylogenetically adjusted quantification of metabolic interaction between microbial species. - Tony J. Lam; Moses Stamboulian; Wontack Han; Yuzhen Ye (PLoS Comput. Biol., 2020)

Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species. - Moses Stamboulian; Jamie Canderan; Yuzhen Ye (PLoS Comput. Biol., 2022)