Segmentation of Lesions in Dermoscopy Images Using Saliency Map And Contour Propagation. - Mostafa Jahanifar; Neda Zamani Tajeddin; Ali Gooya; Babak Mohammadzadeh Asl (CoRR, 2017)

Nuclei Detection Using Mixture Density Networks. - Navid Alemi Koohbanani; Mostafa Jahanifar; Ali Gooya; Nasir M. Rajpoot (MLMI@MICCAI, 2018)

Leveraging Transfer Learning for Segmenting Lesions and their Attributes in Dermoscopy Images. - Navid Alemi Koohbanani; Mostafa Jahanifar; Neda Zamani Tajeddin; Ali Gooya; Nasir M. Rajpoot (CoRR, 2018)

Nuclear Instance Segmentation Using a Proposal-Free Spatially Aware Deep Learning Framework. - Navid Alemi Koohbanani; Mostafa Jahanifar; Ali Gooya; Nasir M. Rajpoot (MICCAI (1), 2019)

NuClick: From Clicks in the Nuclei to Nuclear Boundaries. - Mostafa Jahanifar; Navid Alemi Koohbanani; Nasir M. Rajpoot (CoRR, 2019)

Supervised Saliency Map Driven Segmentation of Lesions in Dermoscopic Images. - Mostafa Jahanifar; Neda Zamani Tajeddin; Babak Mohammadzadeh Asl; Ali Gooya (IEEE J. Biomed. Health Informatics, 2019)

PanNuke Dataset Extension, Insights and Baselines. - Jevgenij Gamper; Navid Alemi Koohbanani; Simon Graham; Mostafa Jahanifar; Syed Ali Khurram; Ayesha Azam; Katherine Hewitt; Nasir M. Rajpoot (CoRR, 2020)

NuClick: A Deep Learning Framework for Interactive Segmentation of Microscopy Images. - Navid Alemi Koohbanani; Mostafa Jahanifar; Neda Zamani Tajadin; Nasir M. Rajpoot (CoRR, 2020)

Automatic Recognition of the Supraspinatus Tendinopathy from Ultrasound Images using Convolutional Neural Networks. - Mostafa Jahanifar; Neda Zamani Tajeddin; Meisam Hasani; Babak Shekarchi; Kamran Azema (CoRR, 2020)

NuClick: A deep learning framework for interactive segmentation of microscopic images. - Navid Alemi Koohbanani; Mostafa Jahanifar; Neda Zamani Tajadin; Nasir M. Rajpoot (Medical Image Anal., 2020)

A Multi-Organ Nucleus Segmentation Challenge. - Neeraj Kumar 002; Ruchika Verma; Deepak Anand; Yanning Zhou 001; Omer Fahri Onder; Efstratios Tsougenis; Hao Chen 011; Pheng-Ann Heng; Jiahui Li 005; Zhiqiang Hu; Yunzhi Wang; Navid Alemi Koohbanani; et al. (IEEE Trans. Medical Imaging, 2020)

Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. - Simon Graham; Mostafa Jahanifar; Ayesha Azam; Mohammed Nimir; Yee-Wah Tsang; Katherine Dodd; Emily Hero; Harvir Sahota; Atisha Tank; Ksenija Benes; Noorul Wahab; Fayyaz A. Minhas; et al. (ICCVW, 2021)

Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input. - Mostafa Jahanifar; Neda Zamani Tajeddin; Navid Alemi Koohbanani; Nasir M. Rajpoot (ICCVW, 2021)

Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. - Adam J. Shephard; Simon Graham; Raja Muhammad Saad Bashir; Mostafa Jahanifar; Hanya Mahmood; Syed Ali Khurram; Nasir M. Rajpoot (ICCVW, 2021)

Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge. - Mostafa Jahanifar; Adam J. Shephard; Neda Zamanitajeddin; Raja Muhammad Saad Bashir; Mohsin Bilal; Syed Ali Khurram; Fayyaz A. Minhas; Nasir M. Rajpoot (MIDOG/MOOD/Learn2Reg@MICCAI, 2021)

Cells are Actors: Social Network Analysis with Classical ML for SOTA Histology Image Classification. - Neda Zamanitajeddin; Mostafa Jahanifar; Nasir M. Rajpoot (MICCAI (8), 2021)

Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. - Noor ul Wahab; Islam M. Miligy; Katherine Dodd; Harvir Sahota; Michael Toss; Wenqi Lu 001; Mostafa Jahanifar; Mohsin Bilal; Simon Graham; Young Park; Giorgos Hadjigeorghiou; Abhir Bhalerao; et al. (CoRR, 2021)

CoNIC: Colon Nuclei Identification and Counting Challenge 2022. - Simon Graham; Mostafa Jahanifar; Quoc Dang Vu; Giorgos Hadjigeorghiou; Thomas Leech; David R. J. Snead; Shan E Ahmed Raza; Fayyaz A. Minhas; Nasir M. Rajpoot (CoRR, 2021)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2021)

IMPaSh: A Novel Domain-Shift Resistant Representation for Colorectal Cancer Tissue Classification. - Trinh Thi Le Vuong; Quoc Dang Vu; Mostafa Jahanifar; Simon Graham; Jin Tae Kwak; Nasir M. Rajpoot (ECCV Workshops (3), 2022)

Nuclear Segmentation and Classification: On Color and Compression Generalization. - Quoc Dang Vu; Robert Jewsbury; Simon Graham; Mostafa Jahanifar; Shan-E-Ahmed Raza; Fayyaz Minhas; Abhir Bhalerao; Nasir M. Rajpoot (MLMI@MICCAI, 2022)

One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Fayyaz A. Minhas; David R. J. Snead; Nasir M. Rajpoot (CoRR, 2022)

Mitosis domain generalization in histopathology images - The MIDOG challenge. - Marc Aubreville; Nikolas Stathonikos; Christof A. Bertram; Robert Klopfleisch; Natalie D. ter Hoeve; Francesco Ciompi; Frauke Wilm; Christian Marzahl; Taryn A. Donovan; Andreas K. Maier; Jack Breen; Nishant Ravikumar; et al. (CoRR, 2022)

TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. - Adam J. Shephard; Mostafa Jahanifar; Ruoyu Wang 027; Muhammad Dawood; Simon Graham; Kastytis Sidlauskas; Syed Ali Khurram; Nasir M. Rajpoot; Shan E Ahmed Raza (CoRR, 2022)

Stain-Robust Mitotic Figure Detection for MIDOG 2022 Challenge. - Mostafa Jahanifar; Adam J. Shephard; Neda Zamanitajeddin; Shan E Ahmed Raza; Nasir M. Rajpoot (CoRR, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

Why is the Winner the Best? - Matthias Eisenmann; Annika Reinke; Vivienn Weru; Minu Dietlinde Tizabi; Fabian Isensee; Tim J. Adler; Sharib Ali; Vincent Andrearczyk; Marc Aubreville; Ujjwal Baid; Spyridon Bakas; Niranjan Balu; et al. (CVPR, 2023)

Accurate segmentation of nuclear instances using a double-stage neural network. - Kesi Xu; Mostafa Jahanifar; Simon Graham; Nasir M. Rajpoot (Digital and Computational Pathology, 2023)

Nuclear Segmentation and Classification: On Color & Compression Generalization. - Quoc Dang Vu; Robert Jewsbury; Simon Graham; Mostafa Jahanifar; Shan E Ahmed Raza; Fayyaz Minhas; Abhir Bhalerao; Nasir M. Rajpoot (CoRR, 2023)

CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (CoRR, 2023)

A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia. - Adam J. Shephard; Raja Muhammad Saad Bashir; Hanya Mahmood; Mostafa Jahanifar; Fayyaz Minhas; Shan E Ahmed Raza; Kris D. McCombe; Stephanie G. Craig; Jacqueline A. James; Jill Brooks; Paul Nankivell; Hisham Mehanna; et al. (CoRR, 2023)

Mitosis domain generalization in histopathology images - The MIDOG challenge. - Marc Aubreville; Nikolas Stathonikos; Christof A. Bertram; Robert Klopfleisch; Natalie D. ter Hoeve; Francesco Ciompi; Frauke Wilm; Christian Marzahl; Taryn A. Donovan; Andreas K. Maier; Jack Breen; Nishant Ravikumar; et al. (Medical Image Anal., 2023)

One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Shan-E-Ahmed Raza; Fayyaz A. Afsar; David R. J. Snead; Nasir M. Rajpoot (Medical Image Anal., 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. - Adam J. Shephard; Mostafa Jahanifar; Ruoyu Wang 027; Muhammad Dawood; Simon Graham; Kastytis Sidlauskas; Syed Ali Khurram; Nasir M. Rajpoot; Shan E Ahmed Raza (ISBI, 2024)

TIAViz: A Browser-based Visualization Tool for Computational Pathology Models. - Mark Eastwood; John Pocock; Mostafa Jahanifar; Adam Shephard; Skiros Habib; Ethar Alzaid; Abdullah Alsalemi; Jan Lukas Robertus; Nasir M. Rajpoot; Shan E Ahmed Raza; Fayyaz Minhas (CoRR, 2024)

Benchmarking Domain Generalization Algorithms in Computational Pathology. - Neda Zamanitajeddin; Mostafa Jahanifar; Kesi Xu; Fouzia Siraj; Nasir M. Rajpoot (CoRR, 2024)

Domain generalization across tumor types, laboratories, and species - Insights from the 2022 edition of the Mitosis Domain Generalization Challenge. - Marc Aubreville; Nikolas Stathonikos; Taryn A. Donovan; Robert Klopfleisch; Jonas Ammeling; Jonathan Ganz; Frauke Wilm; Mitko Veta; Samir Jabari; Markus Eckstein; Jonas Annuscheit; Christian Krumnow; et al. (Medical Image Anal., 2024)

Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. - Mostafa Jahanifar; Adam Shephard; Neda Zamanitajeddin; Simon Graham; Shan E Ahmed Raza; Fayyaz Minhas; Nasir M. Rajpoot (Medical Image Anal., 2024)

Social network analysis of cell networks improves deep learning for prediction of molecular pathways and key mutations in colorectal cancer. - Neda Zamanitajeddin; Mostafa Jahanifar; Mohsin Bilal; Mark Eastwood; Nasir M. Rajpoot (Medical Image Anal., 2024)

CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. - Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Martin Weigert 001; Uwe Schmidt; Wenhua Zhang; Jun Zhang 018; Sen Yang 006; Jinxi Xiang; Xiyue Wang; Josef Lorenz Rumberger; Elias Baumann; et al. (Medical Image Anal., 2024)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - Johnathan Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2024)

HISTOPANTUME: Histological Pan-cancer Tumor image dataset. - Neda Zamanitajeddin; Mostafa Jahanifar; Fouzia Siraj; Nasir M. Rajpoot (Zenodo, 2024)

From Traditional to Deep Learning Approaches in Whole Slide Image Registration: A Methodological Review. - Behnaz Elhaminia; Abdullah Alsalemi; Esha Nasir; Mostafa Jahanifar; Ruqayya Awan; Lawrence Young; Nasir M. Rajpoot; Fayyaz Minhas; Shan E Ahmed Raza (CoRR, 2025)

Domain Generalization in Computational Pathology: Survey and Guidelines. - Mostafa Jahanifar; Manahil Raza; Kesi Xu; Trinh Thi Le Vuong; Robert Jewsbury; Adam Shephard; Neda Zamanitajeddin; Jin Tae Kwak; Shan E Ahmed Raza; Fayyaz Minhas; Nasir M. Rajpoot (ACM Comput. Surv., 2025)