SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction. - Mostofa Rafid Uddin; Sazan Mahbub; Mohammad Saifur Rahman 001; Md. Shamsuzzoha Bayzid (Bioinform., 2020)

Practical Analysis of Macromolecule Identity from Cryo-electron Tomography Images using Deep Learning. - Mostofa Rafid Uddin; Ajmain Yasar Ahmed; Kafi Khan; Md Shahrar Fatemi; Xiangrui Zeng; Min Xu 009 (AIPR, 2021)

Harmony: A Generic Unsupervised Approach for Disentangling Semantic Content from Parameterized Transformations. - Mostofa Rafid Uddin; Gregory Howe; Xiangrui Zeng; Min Xu 009 (CVPR, 2022)

Deep Active Learning for Cryo-Electron Tomography Classification. - Tianyang Wang; Bo Li; Jing Zhang 062; Xiangrui Zeng; Mostofa Rafid Uddin; Wei Wu; Min Xu 009 (ICIP, 2022)

Unsupervised Multi-Task Learning for 3D Subtomogram Image Alignment, Clustering and Segmentation. - Haoyi Zhu; Chuting Wang; Yuanxin Wang 001; Zhaoxin Fan; Mostofa Rafid Uddin; Xin Gao 001; Jing Zhang 062; Xiangrui Zeng; Min Xu 009 (ICIP, 2022)

Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization. - Hmrishav Bandyopadhyay; Zihao Deng; Leiting Ding; Sinuo Liu; Mostofa Rafid Uddin; Xiangrui Zeng; Sima Behpour; Min Xu 009 (Bioinform., 2022)

Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series. - Xiangrui Zeng; Ziqian Lin; Mostofa Rafid Uddin; Bo Zhou 009; Chao Cheng; Jing Zhang 062; Zachary Freyberg; Min Xu 009 (J. Comput. Biol., 2022)

Towards molecular structure discovery from cryo-ET density volumes via modelling auxiliary semantic prototypes. - Ashwin R. Nair; Xingjian Li 012; Bhupendra Solanki; Souradeep Mukhopadhyay; Ankit Jha; Mostofa Rafid Uddin; Mainak Singha; Biplab Banerjee; Min Xu (Briefings Bioinform., 2024)

DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization. - Mostofa Rafid Uddin; Min Xu 009 (CoRR, 2024)

Improving Knowledge Distillation in Transfer Learning with Layer-wise Learning Rates. - Shirley Kokane; Mostofa Rafid Uddin; Min Xu 009 (CoRR, 2024)

DiffCAM: Data-Driven Saliency Maps by Capturing Feature Differences. - Xingjian Li 002; Qiming Zhao; Neelesh Bisht; Mostofa Rafid Uddin; Jin Yu Kim; Bryan Zhang; Min Xu 009 (CVPR, 2025)