Comparing Methods for Species Tree Estimation with Gene Duplication and Loss. - James Willson; Mrinmoy Saha Roddur; Tandy J. Warnow (AlCoB, 2021)

Inferring Temporally Consistent Migration Histories. - Mrinmoy Saha Roddur; Sagi Snir; Mohammed El-Kebir (WABI, 2023)

TRIBAL: Tree Inference of B Cell Clonal Lineages. - Leah L. Weber; Derek Reiman; Mrinmoy Saha Roddur; Yuanyuan Qi; Mohammed El-Kebir; Aly A. Khan (RECOMB, 2024)

Enforcing Temporal Consistency in Migration History Inference. - Mrinmoy Saha Roddur; Sagi Snir; Mohammed El-Kebir (J. Comput. Biol., 2024)

Characterizing the Solution Space of Migration Histories of Metastatic Cancers with MACH2. - Mrinmoy Saha Roddur; Vikram Ramavarapu; Abigail Bunkum; Ariana Huebner; Roman Mineyev; Nicholas McGranahan; Simone Zaccaria; Mohammed El-Kebir (RECOMB, 2025)