From Nonspecific DNA-Protein Encounter Complexes to the Prediction of DNA-Protein Interactions. - Mu Gao; Jeffrey Skolnick (PLoS Comput. Biol., 2009)

A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome. - Mu Gao; Jeffrey Skolnick (PLoS Comput. Biol., 2009)

iAlign: a method for the structural comparison of protein-protein interfaces. - Mu Gao; Jeffrey Skolnick (Bioinform., 2010)

PSiFR: an integrated resource for prediction of protein structure and function. - Shashi Bhushan Pandit; Michal Brylinski; Hongyi Zhou; Mu Gao; Adrian K. Arakaki; Jeffrey Skolnick (Bioinform., 2010)

APoc: large-scale identification of similar protein pockets. - Mu Gao; Jeffrey Skolnick (Bioinform., 2013)

A Comprehensive Survey of Small-Molecule Binding Pockets in Proteins. - Mu Gao; Jeffrey Skolnick (PLoS Comput. Biol., 2013)

A hybrid approach to pedestrian clothing color attribute extraction. - Mu Gao; Yuning Du; Haizhou Ai; Shihong Lao (MVA, 2015)

A feature fusion strategy for person re-identification. - Mu Gao; Haizhou Ai; Bo Bai (ICIP, 2016)

High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function. - Mu Gao; Peik Lund-Andersen; Alex Morehead; Sajid Mahmud; Chen Chen; Xiao Chen; Nabin Giri; Raj S. Roy; Farhan Quadir; T. Chad Effler; Ryan Prout; Subil Abraham; et al. (MLHPC@SC, 2021)

A novel sequence alignment algorithm based on deep learning of the protein folding code. - Mu Gao; Jeffrey Skolnick (Bioinform., 2021)

A General Framework to Learn Tertiary Structure for Protein Sequence Characterization. - Mu Gao; Jeffrey Skolnick (Frontiers Bioinform., 2021)

AlphaFold 2: Why It Works and Its Implications for Understanding the Relationships of Protein Sequence, Structure, and Function. - Jeffrey Skolnick; Mu Gao; Hongyi Zhou; Suresh Singh (J. Chem. Inf. Model., 2021)

Proteome-scale Deployment of Protein Structure Prediction Workflows on the Summit Supercomputer. - Mu Gao; Mark Coletti; Russell B. Davidson; Ryan Prout; Subil Abraham; Benjamín Hernández; Ada Sedova (IPDPS Workshops, 2022)

Predicted structural proteome of Sphagnum divinum and proteome-scale annotation. - Russell B. Davidson; Mark Coletti; Mu Gao; Bryan Piatkowski; Avinash Sreedasyam; Farhan Quadir; David J. Weston; Jeremy Schmutz; Jianlin Cheng; Jeffrey Skolnick; Jerry M. Parks; Ada Sedova (Bioinform., 2023)

HiGen: Hierarchy-Aware Sequence Generation for Hierarchical Text Classification. - Vidit Jain; Mukund Rungta; Yuchen Zhuang; Yue Yu 001; Zeyu Wang; Mu Gao; Jeffrey Skolnick; Chao Zhang 014 (EACL (1), 2024)