Enabling Systems Biology: A Scientific Problem-Solving Environment. - Mudita Singhal; Eric G. Stephan; Kyle R. Klicker; Lynn Trease; George Chin Jr.; Deborah K. Gracio; Deborah A. Payne (International Conference on Computational Science, 2004)

IN-SPIRE InfoVis 2004 Contest Entry. - Pak Chung Wong; Elizabeth G. Hetzler; Christian Posse; Mark A. Whiting; Susan Havre; Nick Cramer; Anuj R. Shah; Mudita Singhal; Alan Turner; James J. Thomas (INFOVIS, 2004)

Integrating Evolving Tools for Proteomics Research. - Susan Havre; Mudita Singhal; Banu Gopalan; Deborah A. Payne; Kyle R. Klicker; Gary Kiebel; Kenneth J. Auberry; Eric G. Stephan; Bobbie-Jo M. Webb-Robertson; Deborah K. Gracio (METMBS, 2004)

Computational Cell Environment: A Problem Solving Environment for Integrating Diverse Biological Data. - Kyle R. Klicker; Mudita Singhal; Eric G. Stephan; Lynn Trease; Deborah K. Gracio (METMBS, 2004)

PQuad: Visualization of Predicted Peptides and Proteins. - Susan L. Havre; Mudita Singhal; Deborah A. Payne; Bobbie-Jo M. Webb-Robertson (IEEE Visualization, 2004)

Problem Solving Environment Approach to Integrating Diverse Biological Data Sources. - Eric G. Stephan; Kyle R. Klicker; Mudita Singhal; Heidi J. Sofia (CSB Workshops, 2005)

Bioinformatics Approach for Exploring MS/MS Proteomics Data. - Mudita Singhal; Kyle R. Klicker; George Chin Jr.; Lynn Trease; Eric G. Stephan; Deborah K. Gracio (HICSS, 2005)

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. - Christopher S. Oehmen; Lee Ann McCue; Joshua N. Adkins; Katrina M. Waters; Tim Carlson; William R. Cannon; Bobbie-Jo M. Webb-Robertson; Douglas J. Baxter; Elena S. Peterson; Mudita Singhal; Anuj R. Shah; Kyle R. Klicker (SC, 2006)

Simulation of biochemical networks using COPASI: a complex pathway simulator. - Sven Sahle; Ralph Gauges; Jürgen Pahle; Natalia Simus; Ursula Kummer; Stefan Hoops; Christine Lee; Mudita Singhal; Liang Xu; Pedro Mendes 001 (WSC, 2006)

COPASI - a COmplex PAthway SImulator. - Stefan Hoops; Sven Sahle; Ralph Gauges; Christine Lee; Jürgen Pahle; Natalia Simus; Mudita Singhal; Liang Xu; Pedro Mendes 001; Ursula Kummer (Bioinform., 2006)

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; W. Hayes McDonald; Dale Pelletier; et al. (ICMLA, 2007)

Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager. - Anuj R. Shah; Mudita Singhal; Kyle R. Klicker; Eric G. Stephan; H. Steven Wiley; Katrina M. Waters (Bioinform., 2007)

PQuad - a visual analysis platform for proteomic data exploration of microbial organisms. - Bobbie-Jo M. Webb-Robertson; Elena S. Peterson; Mudita Singhal; Kyle R. Klicker; Christopher S. Oehmen; Joshua N. Adkins; Susan L. Havre (Bioinform., 2007)

A domain-based approach to predict protein-protein interactions. - Mudita Singhal; Haluk Resat (BMC Bioinform., 2007)

CABIN: Collective Analysis of Biological Interaction Networks. - Mudita Singhal; Kelly Domico (Comput. Biol. Chem., 2007)

An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses. - Anuj R. Shah; Mudita Singhal; Tara D. Gibson; Chandrika Sivaramakrishnan; Katrina M. Waters; Ian Gorton (eScience, 2008)

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress. - Ronald C. Taylor; George K. Acquaah-Mensah; Mudita Singhal; Deepti Malhotra; Shyam Biswal (PLoS Comput. Biol., 2008)

An analysis pipeline for the inference of protein-protein interaction networks. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Jason M. Gilmore; William R. Cannon; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; et al. (Int. J. Data Min. Bioinform., 2009)

Visual analysis of dynamic data streams. - George Chin Jr.; Mudita Singhal; Grant C. Nakamura; Vidhya Gurumoorthi; Natalie Freeman-Cadoret (Inf. Vis., 2009)

Using support vector machine for improving protein-protein interaction prediction utilizing domain interactions. - Mudita Singhal; Anuj R. Shah; Joshua N. Adkins; Roslyn Brown (BCB, 2010)

Machine learning based prediction for peptide drift times in ion mobility spectrometry. - Anuj R. Shah; Khushbu Agarwal; Erin S. Baker; Mudita Singhal; Anoop M. Mayampurath; Yehia M. Ibrahim; Lars J. Kangas; Matthew E. Monroe; Rui Zhao; Mikhail E. Belov; Gordon A. Anderson; Richard D. Smith (Bioinform., 2010)

Footprints: A Visual Search Tool that Supports Discovery and Coverage Tracking. - Ellen Isaacs; Kelly Domico; Shane Ahern; Eugene Bart; Mudita Singhal (IEEE Trans. Vis. Comput. Graph., 2014)

Detecting Insider Threat from Enterprise Social and Online Activity Data. - Gaurang Gavai; Kumar Sricharan; Dave Gunning; Rob Rolleston; John Hanley; Mudita Singhal (MIST@CCS, 2015)

Supervised and Unsupervised methods to detect Insider Threat from Enterprise Social and Online Activity Data. - Gaurang Gavai; Kumar Sricharan; Dave Gunning; John Hanley; Mudita Singhal; Rob Rolleston (J. Wirel. Mob. Networks Ubiquitous Comput. Dependable Appl., 2015)