Deep Graph Library: Towards Efficient and Scalable Deep Learning on Graphs. - Minjie Wang; Lingfan Yu; Da Zheng; Quan Gan; Yu Gai; Zihao Ye 001; Mufei Li; Jinjing Zhou; Qi Huang 001; Chao Ma 025; Ziyue Huang; Qipeng Guo; et al. (CoRR, 2019)

De novo generation of dual-target ligands using adversarial training and reinforcement learning. - Fengqing Lu; Mufei Li; Xiaoping Min; Chunyan Li 002; Xiangxiang Zeng (Briefings Bioinform., 2021)

DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Science. - Mufei Li; Jinjing Zhou; Jiajing Hu; Wenxuan Fan; Yangkang Zhang; Yaxin Gu; George Karypis (CoRR, 2021)

Benchmarking Accuracy and Generalizability of Four Graph Neural Networks Using Large In Vitro ADME Datasets from Different Chemical Spaces. - Fabio Broccatelli; Richard Trager; Michael Reutlinger; George Karypis; Mufei Li (CoRR, 2021)

Graph Neural Networks in Life Sciences: Opportunities and Solutions. - Zichen Wang 002; Vassilis N. Ioannidis; Huzefa Rangwala; Tatsuya Arai; Ryan Brand; Mufei Li; Yohei Nakayama (KDD, 2022)

KGExplainer: Towards Exploring Connected Subgraph Explanations for Knowledge Graph Completion. - Tengfei Ma 002; Xiang Song 003; Wen Tao; Mufei Li; Jiani Zhang 003; Xiaoqin Pan; Jianxin Lin; Bosheng Song; Xiangxiang Zeng (CoRR, 2024)

LayerDAG: A Layerwise Autoregressive Diffusion Model for Directed Acyclic Graph Generation. - Mufei Li; Viraj Shitole; Eli Chien; Changhai Man; Zhaodong Wang; Srinivas Sridharan 002; Ying Zhang; Tushar Krishna; Pan Li 005 (CoRR, 2024)

Underestimated Privacy Risks for Minority Populations in Large Language Model Unlearning. - Rongzhe Wei; Mufei Li; Mohsen Ghassemi; Eleonora Kreacic; Yifan Li; Xiang Yue; Bo Li; Vamsi K. Potluru; Pan Li 005; Eli Chien (CoRR, 2024)

GraphMaker: Can Diffusion Models Generate Large Attributed Graphs? - Mufei Li; Eleonora Kreacic; Vamsi K. Potluru; Pan Li 005 (Trans. Mach. Learn. Res., 2024)

Towards Synergistic Path-based Explanations for Knowledge Graph Completion: Exploration and Evaluation. - Tengfei Ma 002; Xiang Song 003; Wen Tao; Mufei Li; Jiani Zhang 003; Xiaoqin Pan; Yijun Wang 002; Bosheng Song; Xiangxiang Zeng (ICLR, 2025)

Simple is Effective: The Roles of Graphs and Large Language Models in Knowledge-Graph-Based Retrieval-Augmented Generation. - Mufei Li; Siqi Miao 001; Pan Li 005 (ICLR, 2025)

LayerDAG: A Layerwise Autoregressive Diffusion Model for Directed Acyclic Graph Generation. - Mufei Li; Viraj Shitole; Eli Chien; Changhai Man; Zhaodong Wang; Srinivas; Ying Zhang; Tushar Krishna; Pan Li 005 (ICLR, 2025)

Graph-KV: Breaking Sequence via Injecting Structural Biases into Large Language Models. - Haoyu Wang 004; Peihao Wang; Mufei Li; Shikun Liu; Siqi Miao 001; Zhangyang Wang; Pan Li 005 (CoRR, 2025)

Weak-to-Strong GraphRAG: Aligning Weak Retrievers with Large Language Models for Graph-based Retrieval Augmented Generation. - Deyu Zou; Yongqiang Chen; Mufei Li; Siqi Miao 001; Chenxi Liu; Bo Han; James Cheng; Pan Li 005 (CoRR, 2025)