RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. - Mugdha Khaladkar; Vivian Bellofatto; Jason T. L. Wang; Bin Tian 002; Kaizhong Zhang (BIBE, 2006)

Constrained RNA Structural Alignment: Algorithms and Application to Motif Detection in the Untranslated Regions of Trypanosoma brucei mRNAs. - Mugdha Khaladkar; Vivian Bellofatto; Jason Tsong-Li Wang; Vandanaben Patel; Marvin K. Nakayama (BIBE, 2007)

Detecting Conserved RNA Secondary Structures in Viral Genomes: The RADAR Approach. - Mugdha Khaladkar; Jason T. L. Wang (BioSurveillance, 2007)

RADAR: a web server for RNA data analysis and research. - Mugdha Khaladkar; Vivian Bellofatto; Jason Tsong-Li Wang; Bin Tian 002; Bruce A. Shapiro (Nucleic Acids Res., 2007)

Detecting conserved secondary structures in RNA molecules using constrained structural alignment. - Mugdha Khaladkar; Vandanaben Patel; Vivian Bellofatto; Jeffrey Wilusz; Jason Tsong-Li Wang (Comput. Biol. Chem., 2008)

A Method for Discovering Common Patterns from Two RNA Secondary Structures and its Application to Structural Repeat Detection. - Lei Hua; Jason T. L. Wang; Xiang Ji; Ankur Malhotra; Mugdha Khaladkar; Bruce A. Shapiro; Kaizhong Zhang (J. Bioinform. Comput. Biol., 2012)

PIVOT: platform for interactive analysis and visualization of transcriptomics data. - Qin Zhu; Stephen A. Fisher; Hannah Dueck; Sarah Middleton; Mugdha Khaladkar; Junhyong Kim (BMC Bioinform., 2018)