CMInject: Python framework for the numerical simulation of nanoparticle injection pipelines. - Simon Welker; Muhamed Amin; Jochen Küpper (Comput. Phys. Commun., 2022)

Bridging the Coordination Chemistry of Small Compounds and Metalloproteins Using Machine Learning. - Katarzyna Kapuscinska; Zofia Dukala; Mekhola Doha; Eman Ansari; Jimin Wang; Gary W. Brudvig; Bernand Brooks; Muhamed Amin (J. Chem. Inf. Model., 2024)

Leveraging-Induced Polarization for Drug Discovery: Efficient IC50 Prediction Using Minimal Features. - Ashraf Mohamed; Bernard R. Brooks; Muhamed Amin (J. Chem. Inf. Model., 2025)

Boltzmann Classifier: A Thermodynamic-Inspired Approach to Supervised Learning. - Muhamed Amin; Bernard R. Brooks (CoRR, 2025)