Cervix Cancer Spatial Modelling for Brachytherapy Applicator Analysis. - Peter Rogelj; Muhamed Barakovic (Informatica (Slovenia), 2015)

Learning Global Brain Microstructure Maps Using Trainable Sparse Encoders. - Jonathan Rafael-Patino; Muhamed Barakovic; Gabriel Girard; Alessandro Daducci; Jean-Philippe Thiran (ICIP, 2019)

Sparse wars: A survey and comparative study of spherical deconvolution algorithms for diffusion MRI. - Erick Jorge Canales-Rodríguez; Jon Haitz Legarreta; Marco Pizzolato; Gaëtan Rensonnet; Gabriel Girard; Jonathan Rafael-Patino; Muhamed Barakovic; David Romascano; Yasser Alemán-Gómez; Joaquim Radua; Edith Pomarol-Clotet; Raymond Salvador; et al. (NeuroImage, 2019)

Limits to anatomical accuracy of diffusion tractography using modern approaches. - Kurt G. Schilling; Vishwesh Nath; Colin B. Hansen; Prasanna Parvathaneni; Justin A. Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; et al. (NeuroImage, 2019)

Learn to Ignore: Domain Adaptation for Multi-Site MRI Analysis. - Julia Wolleb; Robin Sandkühler; Muhamed Barakovic; Athina Papadopoulou; Nouchine Hadjikhani; Özgür Yaldizli; Jens Kuhle; Cristina Granziera; Philippe C. Cattin (CoRR, 2021)

Model-informed machine learning for multi-component T2 relaxometry. - Thomas Yu; Erick Jorge Canales-Rodríguez; Marco Pizzolato; Gian Franco Piredda; Tom Hilbert; Elda Fischi Gomez; Matthias Weigel; Muhamed Barakovic; Meritxell Bach Cuadra; Cristina Granziera; Tobias Kober; Jean-Philippe Thiran (Medical Image Anal., 2021)

Resolving bundle-specific intra-axonal T2 values within a voxel using diffusion-relaxation tract-based estimation. - Muhamed Barakovic; Chantal M. W. Tax; Umesh S. Rudrapatna; Maxime Chamberland; Jonathan Rafael-Patino; Cristina Granziera; Jean-Philippe Thiran; Alessandro Daducci; Erick Jorge Canales-Rodríguez; Derek K. Jones (NeuroImage, 2021)

Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain. - Christoph Leuze; Maged Goubran; Muhamed Barakovic; Markus Aswendt; Qiyuan Tian; Brian Hsueh; A. Crow; E. M. M. Weber; Gary Steinberg; Michael Zeineh; E. D. Plowey; Alessandro Daducci; et al. (NeuroImage, 2021)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Measuring compartmental T2-orientational dependence in human brain white matter using a tiltable RF coil and diffusion-T2 correlation MRI. - Chantal M. W. Tax; Elena Kleban; Maxime Chamberland; Muhamed Barakovic; Umesh S. Rudrapatna; Derek K. Jones (NeuroImage, 2021)

Learn to Ignore: Domain Adaptation for Multi-site MRI Analysis. - Julia Wolleb; Robin Sandkühler; Florentin Bieder; Muhamed Barakovic; Nouchine Hadjikhani; Athina Papadopoulou; Özgür Yaldizli; Jens Kuhle; Cristina Granziera; Philippe C. Cattin (MICCAI (8), 2022)

Microstructure-Weighted Connectomics in Multiple Sclerosis. - Sara Bosticardo; Simona Schiavi; Sabine Schaedelin; Po-Jui Lu; Muhamed Barakovic; Matthias Weigel; Ludwig Kappos; Jens Kuhle; Alessandro Daducci; Cristina Granziera (Brain Connect., 2022)

Shifts 2.0: Extending The Dataset of Real Distributional Shifts. - Andrey Malinin; Andreas Athanasopoulos; Muhamed Barakovic; Meritxell Bach Cuadra; Mark J. F. Gales; Cristina Granziera; Mara Graziani; Nikolay Kartashev; Konstantinos Kyriakopoulos; Po-Jui Lu; Nataliia Molchanova; Antonis Nikitakis; et al. (CoRR, 2022)

Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. - Chiara Maffei; Gabriel Girard; Kurt G. Schilling; Dogu Baran Aydogan; Nagesh Adluru; Andrey Zhylka; Ye Wu 001; Matteo Mancini; Andac Hamamci; Alessia Sarica; Achille Teillac; Steven H. Baete; et al. (NeuroImage, 2022)

Improving Multi-Tensor Fitting with Global Information from Track Orientation Density Imaging. - Erick Hernandez-Gutierrez; Ricardo Coronado-Leija; Alonso Ramirez-Manzanares; Muhamed Barakovic; Stefano Magon; Maxime Descoteaux (CDMRI@MICCAI, 2023)

GAMER-MRIL identifies Disability-Related Brain Changes in Multiple Sclerosis. - Po-Jui Lu; Benjamin Odry; Muhamed Barakovic; Matthias Weigel; Robin Sandkühler; Reza Rahmanzadeh; Xinjie Chen; Mario Ocampo-Pineda; Jens Kuhle; Ludwig Kappos; Philippe C. Cattin; Cristina Granziera (CoRR, 2023)

FIESTA: Autoencoders for accurate fiber segmentation in tractography. - Félix Dumais; Jon Haitz Legarreta; Carl Lemaire; Philippe Poulin; François Rheault; Laurent Petit; Muhamed Barakovic; Stefano Magon; Maxime Descoteaux; Pierre-Marc Jodoin (NeuroImage, 2023)