Optimization of an EHR Mobile Application Using the UFuRT Conceptual Framework. - Fred Ferreira; Paul Loubser; John Chapman; Muhammad Amith; Kaafoe Zoker (AMIA, 2012)

An Initial Framework for an Ontology-based Mobile Application for Vaccine Information Retrieval and Education. - Muhammad Amith; Cui Tao (ICBO, 2014)

A Prototype Mobile Virtual Assistant for Semantic-Based Vaccine Information Retrieval. - Muhammad Amith; Cui Tao (ICSH, 2014)

Towards an Ontology-driven Framework to Enable Development of Personalized mHealth Solutions for Cancer Survivors' Engagement in Healthy Living. - Sahiti Myneni; Muhammad Amith; Yimin Geng; Cui Tao (MedInfo, 2015)

A Web Application Towards Semiotic-based Evaluation of Biomedical Ontologies. - Muhammad Amith; Cui Tao (BDM2I@ISWC, 2015)

Developing VISO: Vaccine Information Statement Ontology for patient education. - Muhammad Amith; Yang Gong; Rachel Cunningham; Julie Boom; Cui Tao (J. Biomed. Semant., 2015)

Towards a HPV Vaccine Knowledgebase for Patient Education Content. - Dennis Wang; Rachel Cunningham; Julie Boom; Muhammad Amith; Cui Tao (Nursing Informatics, 2016)

Ontology-Based Dialogue Systems for Improved Patient HPV Vaccine Knowledge and Perception. - Muhammad Amith (DC@ISWC, 2016)

Designing an ontology for emotion-driven visual representations. - Rebecca Lin; Muhammad Tuan Amith; Chen Liang 005; Cui Tao (BIBM, 2017)

Knowledge-Based Approach for Named Entity Recognition in Biomedical Literature: A Use Case in Biomedical Software Identification. - Muhammad Amith; Yaoyun Zhang; Hua Xu 001; Cui Tao (IEA/AIE (2), 2017)

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation. - Muhammad Amith; Frank J. Manion; Marcelline R. Harris; Yaoyun Zhang; Hua Xu 001; Cui Tao (MedInfo, 2017)

Modulated evaluation metrics for drug-based ontologies. - Muhammad Amith; Cui Tao (J. Biomed. Semant., 2017)

Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content. - Muhammad Amith; Rachel Cunningham; Lara S. Savas; Julie Boom; Roger W. Schvaneveldt; Cui Tao; Trevor Cohen (J. Biomed. Informatics, 2017)

Lightweight predicate extraction for patient-level cancer information and ontology development. - Muhammad Amith; Hsing-yi Song; Yaoyun Zhang; Hua Xu 001; Cui Tao (BMC Medical Informatics Decis. Mak., 2017)

OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists. - Muhammad Amith; Frank J. Manion; Chen Liang 005; Marcelline R. Harris; Dennis Wang; Yongqun He; Cui Tao (BIBM, 2018)

VEO-Engine: Interfacing and Reasoning with an Emotion Ontology for Device Visual Expression. - Muhammad Amith; Rebecca Lin; Chen Liang 005; Yang Gong; Cui Tao (HCI (29), 2018)

Representing vaccine misinformation using ontologies. - Muhammad Amith; Cui Tao (J. Biomed. Semant., 2018)

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities. - Muhammad Amith; Zhe He 001; Jiang Bian 001; Juan Antonio Lossio-Ventura; Cui Tao (J. Biomed. Informatics, 2018)

Visualized Emotion Ontology: a model for representing visual cues of emotions. - Rebecca Lin; Muhammad Amith; Chen Liang 005; Rui Duan 004; Yong Chen 016; Cui Tao (BMC Medical Informatics Decis. Mak., 2018)

Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology. - Muhammad Amith; Licong Cui; Kirk Roberts; Hua Xu 001; Cui Tao (BIBM, 2019)

NET-EXPO: A Gephi Plugin Towards Social Network Analysis of Network Exposure for Unipartite and Bipartite Graphs. - Muhammad Tuan Amith; Kayo Fujimoto; Cui Tao (HCI (35), 2019)

Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology. - Fang Li 011; Mingqiang Wang; Huy Anh Pham; Yang Xiang 003; Muhammad Tuan Amith; Cui Tao; Jingcheng Du; Guozheng Rao (ICHI, 2019)

Early Usability Assessment of a Conversational Agent for HPV Vaccination. - Muhammad Amith; Anna Zhu; Rachel Cunningham; Rebecca Lin; Lara S. Savas; Laura Shay; Yong Chen 016; Yang Gong; Julie Boom; Kirk Roberts; Cui Tao (ITCH, 2019)

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines. - Muhammad Amith; Rebecca Lin; Licong Cui; Dennis Wang; Anna Zhu; Grace Xiong; Hua Xu 001; Kirk Roberts; Cui Tao (SEPDA@ISWC, 2019)

Conceiving an application ontology to model patient human papillomavirus vaccine counseling for dialogue management. - Muhammad Amith; Kirk Roberts; Cui Tao (BMC Bioinform., 2019)

Architecture and usability of OntoKeeper, an ontology evaluation tool. - Muhammad Amith; Frank J. Manion; Chen Liang 005; Marcelline R. Harris; Dennis Wang; Yongqun He; Cui Tao (BMC Medical Informatics Decis. Mak., 2019)

A health consumer ontology of fast food information. - Muhammad Amith; Jing Wang; Grace Xiong; Kirk Roberts; Cui Tao (BIBM, 2020)

An Interactive Game for Changing Youth Behavior Regarding E-cigarettes. - Angela Xu; Muhammad Amith; Jianfu Li; Lu Tang 005; Cui Tao (HCI (38), 2020)

Examining Potential Usability and Health Beliefs Among Young Adults Using a Conversational Agent for HPV Vaccine Counseling. - Muhammad Amith; Rebecca Lin; Rachel Cunningham; Qiwei Luna Wu; Lara S. Savas; Yang Gong; Julie A. Boom; Lu Tang 005; Cui Tao (CoRR, 2020)

Recognizing software names in biomedical literature using machine learning. - Qiang Wei 002; Yaoyun Zhang; Muhammad Amith; Rebecca Lin; Jenay Lapeyrolerie; Cui Tao; Hua Xu 001 (Health Informatics J., 2020)

Friend of a Friend with Benefits ontology (FOAF+): extending a social network ontology for public health. - Muhammad Amith; Kayo Fujimoto; Rebecca Mauldin; Cui Tao (BMC Medical Informatics Decis. Mak., 2020)

Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents. - Muhammad Amith; Rebecca Lin; Licong Cui; Dennis Wang; Anna Zhu; Grace Xiong; Hua Xu 001; Kirk Roberts; Cui Tao (BMC Medical Informatics Decis. Mak., 2020)

Expressing and Executing Informed Consent Permissions using SWRL: The All of Us Use Case. - Muhammad Amith; Marcelline R. Harris; Cooper Stansbury; Kathleen Ford; Frank J. Manion; Cui Tao (AMIA, 2021)

Developing Ontologies to Standardize Descriptions of Visual and Dermoscopic Elements. - Rebecca Z. Lin; Muhammad Tuan Amith; Xinyuan Zhang 003; Cynthia Wang; Jeremy Light; John Strickley; Cui Tao (BIBM, 2021)

Dental EHR-infused Persona Ontologies to Enrich Dental Dialogue Interaction of Agents. - Patricia Ngantcha; Muhammad Tuan Amith; Kirk Roberts; John A. Valenza; Muhammad F. Walji; Cui Tao (BIBM, 2021)

Patient-Provider Communication Training Models for Interactive Speech Devices. - Patricia Ngantcha; Muhammad Amith; Cui Tao; Kirk Roberts (HCI (16), 2021)

Experimenting with a Prototype Interactive Narrative Game to Improve Knowledge and Beliefs for the HPV Vaccine. - Anna Zhu; Muhammad Amith; Lu Tang 005; Rachel Cunningham; Angela Xu; Julie A. Boom; Cui Tao (HCI (43), 2021)

The ontology of fast food facts: conceptualization of nutritional fast food data for consumers and semantic web applications. - Muhammad Amith; Chidinma Onye; Tracey Ledoux; Grace Xiong; Cui Tao (BMC Medical Informatics Decis. Mak., 2021)

Toward a standard formal semantic representation of the model card report. - Muhammad Tuan Amith; Licong Cui; Degui Zhi; Kirk Roberts; Xiaoqian Jiang; Fang Li 011; Evan Yu; Cui Tao (BMC Bioinform., 2022)

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). - Yifang Dang; Fang Li 011; Xinyue Hu 002; Vipina Kuttichi Keloth; Meng Zhang; Sunyang Fu; Jingcheng Du; J. Wilfred Fan; Muhammad F. Amith; Evan Yu; Hongfang Liu; Xiaoqian Jiang; et al. (CoRR, 2022)

Evaluating Domain-Independent Small Talk Conversations to Improve Clinical Communication Interaction for Human and Machine. - Chloe Aguilar; Muhammad Amith; Lu Tang 005; Jane Hamilton; Lara S. Savas; Daniel Rhee; Tazrin Khan; Cui Tao (HCI (18), 2023)

Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. - Muhammad Amith; Licong Cui; Kirk Roberts; Cui Tao (WWW (Companion Volume), 2023)

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). - Yifang Dang; Fang Li 011; Xinyue Hu 002; Vipina Kuttichi Keloth; Meng Zhang; Sunyang Fu; Muhammad F. Amith; J. Wilfred Fan; Jingcheng Du; Evan Yu; Hongfang Liu; Xiaoqian Jiang; et al. (J. Am. Medical Informatics Assoc., 2023)

DEVO: an ontology to assist with dermoscopic feature standardization. - Xinyuan Zhang 003; Rebecca Z. Lin; Muhammad Tuan Amith; Cynthia Wang; Jeremy Light; John Strickley; Cui Tao (BMC Medical Informatics Decis. Mak., 2023)

Translating motivational interviewing for the HPV vaccine into a computable ontology model for automated AI conversational interaction. - Nicole Moore; Muhammad Amith; Ana Neumann; Jane Hamilton; Lu Tang 005; Lara S. Savas; Cui Tao (CHI Extended Abstracts, 2024)

A GUI for OBO Foundry's ROBOT Library to Encourage Usability and Adoption. - Luke Liu; Yinglun Zhang; Hande Küçük-McGinty; Muhammad Amith (ICHI, 2024)

Developing a Computational Representation of Human Physical Activity and Exercise Using Open Ontology-Based Approach: A Tai Chi Use Case. - Eloisa Nguyen; Rebecca Z. Lin; Yang Gong; Cui Tao; Muhammad Tuan Amith (ICHI, 2024)

Analyzing Llama 3-based Approach for Axiom Translation from Ontologies. - Xubing Hao; Licong Cui; Cui Tao; Kirk Roberts; Muhammad Amith (KBC-LM/LM-KBC@ISWC, 2024)

Designing a Narrative-Based Video Game for Adolescents Coping with a Parent's Cancer. - Sophia Hamilton; Xubing Hao; Sharon Andrews; Eveyln Roldan; Carlos Martinez; Jane Hamilton; Muhammad Tuan Amith; Licong Cui (HCI (64), 2025)

Constructing A Conversation-First Dialogue Model for Comprehensive, Evidence-Based Counseling for HPV Vaccination for Young Adults. - Lu Tang 005; Chenying Weng; Serena Hou; Lara S. Savas; Ana Neumann; Nicole Moore; Jane Hamilton; Daniel Rhee; Cui Tao; Licong Cui; Muhammad Amith (HCI (26), 2025)