Integrative and Personalized QSAR Analysis in Cancer by Kernelized Bayesian Matrix Factorization. - Muhammad Ammad-ud-din; Elisabeth Georgii; Mehmet Gönen; Tuomo Laitinen; Olli-P. Kallioniemi; Krister Wennerberg; Antti Poso; Samuel Kaski (J. Chem. Inf. Model., 2014)

Regression with n→1 by Expert Knowledge Elicitation. - Marta Soare; Muhammad Ammad-ud-din; Samuel Kaski (ICMLA, 2016)

Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization. - Muhammad Ammad-ud-din; Suleiman A. Khan; Disha Malani; Astrid Murumägi; Olli-P. Kallioniemi; Tero Aittokallio; Samuel Kaski (Bioinform., 2016)

Regression with n$ to$1 by Expert Knowledge Elicitation. - Marta Soare; Muhammad Ammad-ud-din; Samuel Kaski (CoRR, 2016)

Interactive Elicitation of Knowledge on Feature Relevance Improves Predictions in Small Data Sets. - Luana Micallef; Iiris Sundin; Pekka Marttinen; Muhammad Ammad-ud-din; Tomi Peltola; Marta Soare; Giulio Jacucci; Samuel Kaski (IUI, 2017)

Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression. - Muhammad Ammad-ud-din; Suleiman A. Khan; Krister Wennerberg; Tero Aittokallio (Bioinform., 2017)

GFA: Exploratory Analysis of Multiple Data Sources with Group Factor Analysis. - Eemeli Leppäaho; Muhammad Ammad-ud-din; Samuel Kaski (J. Mach. Learn. Res., 2017)

Machine learning methods for improving drug response prediction in cancer. - Muhammad Ammad-ud-din (2017)

Federated Collaborative Filtering for Privacy-Preserving Personalized Recommendation System. - Muhammad Ammad-ud-din; Elena Ivannikova; Suleiman A. Khan; Were Oyomno; Qiang Fu; Kuan Eeik Tan; Adrian Flanagan (CoRR, 2019)

Federated Multi-view Matrix Factorization for Personalized Recommendations. - Adrian Flanagan; Were Oyomno; Alexander Grigorievskiy; Kuan Eeik Tan; Suleiman A. Khan; Muhammad Ammad-ud-din (ECML/PKDD (2), 2020)

A Payload Optimization Method for Federated Recommender Systems. - Farwa K. Khan; Adrian Flanagan; Kuan Eeik Tan; Zareen Alamgir; Muhammad Ammad-ud-din (RecSys, 2021)