Improving secretory proteins prediction in Mycobacterium tuberculosis using the unbiased dipeptide composition with support vector machine. - Saeed Ahmed; Muhammad Kabir; Muhammad Arif 012; Zakir Ali; Farman Ali 002; Zar Nawab Khan Swati (Int. J. Data Min. Bioinform., 2018)

TargetCPP: accurate prediction of cell-penetrating peptides from optimized multi-scale features using gradient boost decision tree. - Muhammad Arif 012; Saeed Ahmad; Farman Ali 002; Ge Fang; Min Li 009; Dong-Jun Yu (J. Comput. Aided Mol. Des., 2020)

Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion. - Fang Ge; Ying Zhang 053; Jian Xu 009; Muhammad Arif 012; Jiangning Song; Dong-Jun Yu (Briefings Bioinform., 2022)

DeepCPPred: A Deep Learning Framework for the Discrimination of Cell-Penetrating Peptides and Their Uptake Efficiencies. - Muhammad Arif 012; Muhammad Kabir; Saeed Ahmed; Abid Khan; Fang Ge; Adel Khelifi; Dong-Jun Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Augmented Reality and its Applications in Education: A Systematic Survey. - Fatima Zulfiqar; Rehan Raza; Muhammad Owais Khan; Muhammad Arif 012; Atif Alvi; Tanvir Alam (IEEE Access, 2023)

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants. - Fang Ge; Chen Li 021; Shahid Iqbal; Muhammad Arif 012; Fuyi Li; Maha A. Thafar; Zihao Yan; Apilak Worachartcheewan; Xiaofeng Xu; Jiangning Song; Dong-Jun Yu (Briefings Bioinform., 2023)

Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm. - Jun Hu 010; Wenwu Zeng; Ning-Xin Jia; Muhammad Arif 012; Dong-Jun Yu; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

Lung-EffNet: Lung cancer classification using EfficientNet from CT-scan images. - Rehan Raza; Fatima Zulfiqar; Muhammad Owais Khan; Muhammad Arif 012; Atif Alvi; Muhammad Aksam Iftikhar; Tanvir Alam (Eng. Appl. Artif. Intell., 2023)

MMPatho: Leveraging Multilevel Consensus and Evolutionary Information for Enhanced Missense Mutation Pathogenic Prediction. - Fang Ge; Muhammad Arif 012; Zihao Yan; Hanin H. Alahmadi; Apilak Worachartcheewan; Dong-Jun Yu; Watshara Shoombuatong (J. Chem. Inf. Model., 2023)

In Silico Analysis of Pathogenic Missense Mutation in GBA protein for Gaucher Disease. - Hend Ghassan Eldous; Maryiam Jama Ali Osman; Syed Abdullah Basit; Muhammad Arif 012; Tanvir Alam (ICMHI, 2024)

Differential Methylation Analysis in Normal Breast Tissue Contralateral to Tumour Reveals PROM1 As a Potential Prognostic Biomarker. - Aya Nour; Rafaa Alalwani; Sara Alresheq; Muhammad Arif 012; Tanvir Alam (ICMHI, 2024)

DPI_CDF: druggable protein identifier using cascade deep forest. - Muhammad Arif 012; Ge Fang; Ali Ghulam; Saleh Musleh; Tanvir Alam (BMC Bioinform., 2024)

KEM-IoMT: Knowledge graph embedding-enhanced accurate medical service recommendation against diabetes. - Nasrullah Khan; Muhammad Rafiq Mufti; Muhammad Arif 012; Amjad Ali 002; Zubair Shah (Comput. Biol. Medicine, 2025)