Registration-Invariant Biomechanical Features for Disease Staging of COPD in SPIROMICS. - Muhammad F. A. Chaudhary; Yue Pan; Di Wang; Sandeep Bodduluri; Surya P. Bhatt; Alejandro P. Comellas; Eric A. Hoffman; Gary E. Christensen; Joseph M. Reinhardt (TIA@MICCAI, 2020)

Single Volume Lung Biomechanics from Chest Computed Tomography Using a Mode Preserving Generative Adversarial Network. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Di Wang; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2022)

Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS. - Yue Pan; Di Wang; Muhammad F. A. Chaudhary; Wei Shao 008; Sarah E. Gerard; Oguz C. Durumeric; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt; Gary E. Christensen (J. Imaging, 2022)

Bridging the Task Barriers: Online Knowledge Distillation Across Tasks for Semi-supervised Mediastinal Segmentation in CT. - Muhammad F. A. Chaudhary; Seyed Soheil Hosseini; R. Graham Barr; Joseph M. Reinhardt; Eric A. Hoffman; Sarah E. Gerard (MLMI@MICCAI (1), 2023)

Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation. - Muhammad F. A. Chaudhary; Joseph M. Reinhardt; Sarah E. Gerard (SASHIMI@MICCAI, 2024)

LungViT: Ensembling Cascade of Texture Sensitive Hierarchical Vision Transformers for Cross-Volume Chest CT Image-to-Image Translation. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2024)

Uncertainty-Aware Test-Time Adaptation for Inverse Consistent Diffeomorphic Lung Image Registration. - Muhammad F. A. Chaudhary; Stephanie M. Aguilera; Arie Nakhmani; Joseph M. Reinhardt; Surya P. Bhatt; Sandeep Bodduluri (ISBI, 2025)