The Development of Computational Biology in Pakistan: Still a Long Way to Go. - Muhammad Ilyas 003; Samrene Sadique; Kahlid Masood; Raheel Qamar; Shahid Nadeem Chohan (PLoS Comput. Biol., 2011)

In silico identification of novel IL-1β inhibitors to target protein-protein interfaces. - Sobia Ahsan Halim; Muhammad Jawad; Muhammad Ilyas 003; Zulfiqar Mir; Atif Anwar Mirza; Tayyab Husnain (Comput. Biol. Chem., 2015)

Epitopes based drug design for dengue virus envelope protein: A computational approach. - Wadood Abdul; Aamir Mehmood; Huma Khan; Muhammad Ilyas 003; Ayaz Ahmad; Mohammed Alarjah; Tareq Abu-Izneid (Comput. Biol. Chem., 2017)