EmbedCaps-DBP: Predicting DNA-Binding Proteins Using Protein Sequence Embedding and Capsule Network. - Muhammad K. N. Mursalim; Tati Rajab Mengko; Rukman Hertadi; Ayu Purwarianti; Meredita Susanty (IEEE Access, 2023)

BiCaps-DBP: Predicting DNA-binding proteins from protein sequences using Bi-LSTM and a 1D-capsule network. - Muhammad K. N. Mursalim; Tati Latifah Rajab Mengko; Rukman Hertadi; Ayu Purwarianti; Meredita Susanty (Comput. Biol. Medicine, 2023)

Leveraging protein language model embeddings and logistic regression for efficient and accurate in-silico acidophilic proteins classification. - Meredita Susanty; Muhammad K. N. Mursalim; Rukman Hertadi; Ayu Purwarianti; Tati L. R. Mengko (Comput. Biol. Chem., 2024)

Classifying alkaliphilic proteins using embeddings from protein language model. - Meredita Susanty; Muhammad K. N. Mursalim; Rukman Hertadi; Ayu Purwarianti; Tati Latifah Rajab Mengko (Comput. Biol. Medicine, 2024)