Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients. - Aaron Carass; Muhan Shao; Xiang Li 063; Blake Dewey; Ari Blitz; Snehashis Roy; Dzung L. Pham; Jerry L. Prince; Lotta Maria Ellingsen (Patch-MI@MICCAI, 2017)

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas. - Muhan Shao; Aaron Carass; Xiang Li 063; Blake E. Dewey; Ari M. Blitz; Jerry L. Prince; Lotta Maria Ellingsen (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks. - Muhan Shao; Shuo Han 001; Aaron Carass; Xiang Li 063; Ari M. Blitz; Jerry L. Prince; Lotta Maria Ellingsen (MLCN/DLF/iMIMIC@MICCAI, 2018)

Deformable model reconstruction of the subarachnoid space. - Jeffrey Glaister; Muhan Shao; Xiang Li 063; Aaron Carass; Snehashis Roy; Ari M. Blitz; Jerry L. Prince; Lotta Maria Ellingsen (Image Processing, 2018)

Large-scale parcellation of the ventricular system using convolutional neural networks. - Hans E. Atlason; Muhan Shao; Vidar Robertsson; Sigurdur Sigurdsson; Vilmundur Gudnason; Jerry L. Prince; Lotta Maria Ellingsen (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Synthesizing Realistic Brain MR Images with Noise Control. - Lianrui Zuo; Blake E. Dewey; Aaron Carass; Yufan He; Muhan Shao; Jacob C. Reinhold; Jerry L. Prince (SASHIMI@MICCAI, 2020)

Dynamic palatogram generation from Cine MRI for normalized speech assessment. - Muhan Shao; Aaron Carass; Jiachen Zhuo; Xiao Liang; Dima H. Ghunaim; Maureen L. Stone; Jerry L. Prince (Image Processing, 2021)

Reconstruction and refinement of crossing muscle fibers in the human tongue. - Muhan Shao; Arnold D. Gomez; Jiachen Zhuo; Xiao Liang; Maureen Stone 001; Aaron Carass; Jerry L. Prince (Image Processing, 2021)

Multiple Sclerosis brain lesion segmentation with different architecture ensembles. - Pouria Tohidi; Samuel W. Remedios; Danielle L. Greenman; Muhan Shao; Shuo Han 001; Blake E. Dewey; Jacob C. Reinhold; Yi-Yu Chou; Dzung L. Pham; Jerry L. Prince; Aaron Carass (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

Evaluating the impact of MR image harmonization on thalamus deep network segmentation. - Muhan Shao; Lianrui Zuo; Aaron Carass; Jiachen Zhuo; Rao P. Gullapalli; Jerry L. Prince (Image Processing, 2022)

Label Propagation Via Random Walk for Training Robust Thalamus Nuclei Parcellation Model from Noisy Annotations. - Anqi Feng; Yuan Xue 002; Yuli Wang; Chang Yan; Zhangxing Bian; Muhan Shao; Jiachen Zhuo; Rao P. Gullapalli; Aaron Carass; Jerry L. Prince (ISBI, 2023)

DRIMET: Deep Registration-based 3D Incompressible Motion Estimation in Tagged-MRI with Application to the Tongue. - Zhangxing Bian; Fangxu Xing; Jinglun Yu; Muhan Shao; Yihao Liu 003; Aaron Carass; Jonghye Woo; Jerry L. Prince (MIDL, 2023)

DrDisco: Deep Registration for Distortion Correction of diffusion MRI with single phase-encoding. - Zhangxing Bian; Muhan Shao; Aaron Carass; Jerry L. Prince (Image Processing, 2023)

FastCod: fast brain connectivity in diffusion imaging. - Zhangxing Bian; Muhan Shao; Jiachen Zhuo; Rao P. Gullapalli; Aaron Carass; Jerry L. Prince (Image Processing, 2023)

Investigation of probability maps in deep-learning-based brain ventricle parcellation. - Yuli Wang; Anqi Feng; Yuan Xue 002; Muhan Shao; Ari M. Blitz; Mark D. Luciano; Aaron Carass; Jerry L. Prince (Image Processing, 2023)

Segmenting thalamic nuclei from manifold projections of multi-contrast MRI. - Chang Yan; Muhan Shao; Zhangxing Bian; Anqi Feng; Yuan Xue 002; Jiachen Zhuo; Rao P. Gullapalli; Aaron Carass; Jerry L. Prince (Image Processing, 2023)

New starting point registration method for tagged MRI tongue motion estimation. - Jinglun Yu; Muhan Shao; Zhangxing Bian; Xiao Liang; Jiachen Zhuo; Maureen Stone 001; Jerry L. Prince (Image Processing, 2023)

Deep Unsupervised Phase-based 3D Incompressible Motion Estimation in Tagged-MRI. - Zhangxing Bian; Fangxu Xing; Jinglun Yu; Muhan Shao; Yihao Liu 003; Aaron Carass; Jonghye Woo; Jerry L. Prince (CoRR, 2023)