Identifying Functional Binding Motifs of Tumor Protein p53 Using Support Vector Machines. - Amit U. Sinha; Mukta Phatak; Raj Bhatnagar; Anil G. Jegga (ICMLA, 2007)

Model Quality Assessment in Membrane Proteins Using predicted Lipid Accessibility Profiles. - Mukta Phatak; Jaroslaw Meller (ISAIM, 2010)

Generalized random set framework for functional enrichment analysis using primary genomics datasets. - Johannes M. Freudenberg; Siva Sivaganesan; Mukta Phatak; Kaustubh Shinde; Mario Medvedovic (Bioinform., 2011)

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules. - Jing Chen 021; Zhen Hu; Mukta Phatak; John Reichard; Johannes M. Freudenberg; Siva Sivaganesan; Mario Medvedovic (PLoS Comput. Biol., 2013)

The pursuit of approaches to federate data to accelerate Alzheimer's disease and related dementia research: GAAIN, DPUK, and ADDI. - Arthur W. Toga; Mukta Phatak; Ioannis Pappas; Simon Thompson; Caitlin P. McHugh; Matthew H. S. Clement; Sarah Bauermeister; Tetsuyuki Maruyama; John Gallacher (Frontiers Neuroinformatics, 2023)