FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution. - Mulin Jun Li; Pak Chung Sham; Junwen Wang (Bioinform., 2010)

ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor. - Jing Qin 004; Mulin Jun Li; Panwen Wang; Michael Q. Zhang; Junwen Wang (Nucleic Acids Res., 2011)

GWASdb: a database for human genetic variants identified by genome-wide association studies. - Mulin Jun Li; Panwen Wang; Xiaorong Liu; Ee Lyn Lim; Zhangyong Wang; Meredith Yeager; Maria P. Wong; Pak Chung Sham; Stephen J. Chanock; Junwen Wang (Nucleic Acids Res., 2012)

GWAS3D: detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications. - Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Pak Chung Sham; Junwen Wang (Nucleic Acids Res., 2013)

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment. - Hari Krishna Yalamanchili; Bin Yan; Mulin Jun Li; Jing Qin 004; Zhongying Zhao 002; Francis Y. L. Chin; Junwen Wang (Bioinform., 2014)

dbPSHP: a database of recent positive selection across human populations. - Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Maria P. Wong; Pak Chung Sham; Junwen Wang (Nucleic Acids Res., 2014)

Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression. - Mulin Jun Li; Bin Yan; Pak Chung Sham; Junwen Wang (Briefings Bioinform., 2015)

ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks. - Panwen Wang; Jing Qin 004; Yiming Qin; Yun Zhu; Lily Yan Wang; Mulin Jun Li; Michael Q. Zhang; Junwen Wang (Nucleic Acids Res., 2015)

Predicting regulatory variants with composite statistic. - Mulin Jun Li; Zhicheng Pan; Zipeng Liu; Jiexing Wu; Panwen Wang; Yun Zhu; Feng Xu; Zhengyuan Xia; Pak Chung Sham; Jean-Pierre A. Kocher; Miao-Xin Li; Jun S. Liu; et al. (Bioinform., 2016)

GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. - Mulin Jun Li; Zipeng Liu; Panwen Wang; Maria P. Wong; Matthew R. Nelson; Jean-Pierre A. Kocher; Meredith Yeager; Pak Chung Sham; Stephen J. Chanock; Zhengyuan Xia; Junwen Wang (Nucleic Acids Res., 2016)

mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers. - Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L. Tran; et al. (Nucleic Acids Res., 2017)

A powerful approach reveals numerous expression quantitative trait haplotypes in multiple tissues. - Dingge Ying; Mulin Jun Li; Pak Chung Sham; Miao-Xin Li (Bioinform., 2018)

GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits. - Dandan Huang; Xianfu Yi; Shijie Zhang; Zhanye Zheng; Panwen Wang; Chenghao Xuan; Pak Chung Sham; Junwen Wang; Mulin Jun Li (Nucleic Acids Res., 2018)

Methods and resources to access mutation-dependent effects on cancer drug treatment. - Hongcheng Yao; Qian Liang; Xinyi Qian; Junwen Wang; Pak Chung Sham; Mulin Jun Li (Briefings Bioinform., 2020)

CAUSALdb: a database for disease/trait causal variants identified using summary statistics of genome-wide association studies. - Jianhua Wang; Dandan Huang; Yao Zhou; Hongcheng Yao; Huanhuan Liu; Sinan Zhai; Chengwei Wu; Zhanye Zheng; Ke Zhao; Zhao Wang; Xianfu Yi; Shijie Zhang; et al. (Nucleic Acids Res., 2020)

QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes. - Zhanye Zheng; Dandan Huang; Jianhua Wang; Ke Zhao; Yao Zhou; Zhenyang Guo; Sinan Zhai; Hang Xu; Hui Cui; Hongcheng Yao; Zhao Wang; Xianfu Yi; et al. (Nucleic Acids Res., 2020)

vSampler: fast and annotation-based matched variant sampling tool. - Dandan Huang; Zhao Wang; Yao Zhou; Qian Liang; Pak Chung Sham; Hongcheng Yao; Mulin Jun Li (Bioinform., 2021)

webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study. - Chen Cao 002; Jianhua Wang; Devin Kwok; Feifei Cui; Zilong Zhang; Da Zhao; Mulin Jun Li; Quan Zou 001 (Nucleic Acids Res., 2022)

VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases. - Dandan Huang; Yao Zhou; Xianfu Yi; Xutong Fan; Jianhua Wang; Hongcheng Yao; Pak Chung Sham; Jihui Hao; Kexin Chen; Mulin Jun Li (Nucleic Acids Res., 2022)

QTLbase2: an enhanced catalog of human quantitative trait loci on extensive molecular phenotypes. - Dandan Huang; Xiangling Feng; Hongxi Yang; Jianhua Wang; Wenwen Zhang; Xutong Fan; Xiaobao Dong; Kexin Chen; Ying Yu; Xin Ma; Xianfu Yi; Mulin Jun Li (Nucleic Acids Res., 2023)

Inferring CTCF-binding patterns and anchored loops across human tissues and cell types. - Hang Xu; Xianfu Yi; Xutong Fan; Chengyue Wu; Wei Wang; Xinlei Chu; Shijie Zhang; Xiaobao Dong; Zhao Wang; Jianhua Wang; Yao Zhou; Ke Zhao; et al. (Patterns, 2023)

SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues. - Zhiwei Zhou; Jingyi Du; Jianhua Wang; Liangyi Liu; M. Gracie Gordon; Chun Jimmie Ye; Joseph E. Powell; Mulin Jun Li; Shuquan Rao (Database J. Biol. Databases Curation, 2024)