Interrelated Two-way Clustering: An Unsupervised Approach for Gene Expression Data Analysis. - Chun Tang; Li Zhang 008; Aidong Zhang; Murali Ramanathan (BIBE, 2001)

Visualized Classification of Multiple Sample Types. - Li Zhang 008; Aidong Zhang; Murali Ramanathan (BIOKDD, 2002)

VizCluster: An Interactive Visualization Approach to Cluster Analysis and Its Application on Microarray Data. - Li Zhang 008; Chun Tang; Yong Shi 002; Yuqing Song 002; Aidong Zhang; Murali Ramanathan (SDM, 2002)

Interrelated Clustering: An Approach for Gene Expression Data Analysis. - Chun Tang; Li Zhang 008; Aidong Zhang; Murali Ramanathan (Computational Biology and Genome Informatics, 2003)

Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression Data. - Li Zhang 008; Aidong Zhang; Murali Ramanathan (CSB, 2003)

Enhanced visualization of time series through higher fourier harmonics. - Li Zhang 008; Aidong Zhang; Murali Ramanathan (BIOKDD, 2003)

An information theoretic approach for analyzing temporal patterns of gene expression. - Jyotsna Kasturi; Raj Acharya; Murali Ramanathan (Bioinform., 2003)

VizCluster and its Application on Classifying Gene Expression Data. - Li Zhang 008; Chun Tang; Yuqing Song 002; Aidong Zhang; Murali Ramanathan (Distributed Parallel Databases, 2003)

Mining coherent gene clusters from gene-sample-time microarray data. - Daxin Jiang; Jian Pei 001; Murali Ramanathan; Chun Tang; Aidong Zhang (KDD, 2004)

ESPD: a pattern detection model underlying gene expression profiles. - Chun Tang; Aidong Zhang; Murali Ramanathan (Bioinform., 2004)

VizStruct: exploratory visualization for gene expression profiling. - Li Zhang 008; Aidong Zhang; Murali Ramanathan (Bioinform., 2004)

SPLINDID: a semi-parametric, model-based method for obtaining transcription rates and gene regulation parameters from genomic and proteomic expression profiles. - Kavitha Bhasi; Alan Forrest; Murali Ramanathan (Bioinform., 2005)

BioStar models of clinical and genomic data for biomedical data warehouse design. - Liangjiang Wang; Aidong Zhang; Murali Ramanathan (Int. J. Bioinform. Res. Appl., 2005)

A novel functional module detection algorithm for protein-protein interaction networks. - Woochang Hwang; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (Algorithms Mol. Biol., 2006)

VizStruct for visualization of genome-wide SNP analyses. - Kavitha Bhasi; Li Zhang 008; Daniel Brazeau; Aidong Zhang; Murali Ramanathan (Bioinform., 2006)

SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction Networks. - Woochang Hwang; Taehyong Kim; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (BIBE, 2007)

Semantic integration to identify overlapping functional modules in protein interaction networks. - Young-Rae Cho; Woochang Hwang; Murali Ramanathan; Aidong Zhang (BMC Bioinform., 2007)

Mining gene-sample-time microarray data: a coherent gene cluster discovery approach. - Daxin Jiang; Jian Pei 001; Murali Ramanathan; Chuan Lin; Chun Tang; Aidong Zhang (Knowl. Inf. Syst., 2007)

Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South Korea. - Taehyong Kim; Woochang Hwang; Aidong Zhang; Surajit Sen; Murali Ramanathan (BIBM, 2008)

Bridging centrality: graph mining from element level to group level. - Woochang Hwang; Taehyong Kim; Murali Ramanathan; Aidong Zhang (KDD, 2008)

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge. - Young-Rae Cho; Lei Shi 021; Murali Ramanathan; Aidong Zhang (BMC Bioinform., 2008)

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions. - Woochang Hwang; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (BMC Bioinform., 2008)

Mining of Attribute Interactions Using Information Theoretic Metrics. - Pritam Chanda; Young-Rae Cho; Aidong Zhang; Murali Ramanathan (ICDM Workshops, 2009)

A graph-based approach for computational model of bone microstructure. - Taehyong Kim; Murali Ramanathan; Aidong Zhang (BCB, 2010)

Computational Framework for Microstructural Bone Dynamics Model and Its Evaluation. - Taehyong Kim; Woochang Hwang; Aidong Zhang; Murali Ramanathan (BIBE, 2010)

Identification of critical location on a microstructural bone network. - Taehyong Kim; Jaehan Koh; Kang Li 003; Murali Ramanathan; Aidong Zhang (BIBM, 2010)

On Mining Statistically Significant Attribute Association Information. - Pritam Chanda; Jianmei Yang; Aidong Zhang; Murali Ramanathan (SDM, 2010)

Mathematical network model for bone mineral density (BMD) and bone quality assessment. - Taehyong Kim; Murali Ramanathan; Lawrence Bone; Aidong Zhang (BCB, 2011)

A Computational Model of Mitigating Disease Spread in Spatial Networks. - Taehyong Kim; Kang Li 003; Aidong Zhang; Surajit Sen; Murali Ramanathan (Int. J. Artif. Life Res., 2011)

Spatial modeling of bone microarchitecture. - Hui Li; Kang Li 003; Taehyong Kim; Aidong Zhang; Murali Ramanathan (Three-Dimensional Image Processing (3DIP) and Applications, 2012)

3D bone microarchitecture modeling and fracture risk prediction. - Hui Li; Cathy Buyea; Xiaoyi Li; Murali Ramanathan; Lawrence Bone; Aidong Zhang (BCB, 2012)

Algorithms for Efficient Mining of Statistically Significant Attribute Association Information - Pritam Chanda; Aidong Zhang; Murali Ramanathan (CoRR, 2012)

A Semi-Supervised Learning Approach to Integrated Salient Risk Features for Bone Diseases. - Hui Li; Xiaoyi Li; Murali Ramanathan; Aidong Zhang (BCB, 2013)

A generative framework for prediction and informative risk factor selection of bone diseases. - Hui Li; Xiaoyi Li; Yuan Zhang 030; Murali Ramanathan; Aidong Zhang (BIBM, 2013)

BoneNET: a network model of bone microstructure and dynamics. - Taehyong Kim; Lawrence Bone; Murali Ramanathan; Aidong Zhang (Int. J. Data Min. Bioinform., 2013)

Bone disease prediction and phenotype discovery using feature representation over electronic health records. - Hui Li; Xiaoyi Li; Xiaowei Jia; Murali Ramanathan; Aidong Zhang (BCB, 2015)

Prediction and Informative Risk Factor Selection of Bone Diseases. - Hui Li; Xiaoyi Li; Murali Ramanathan; Aidong Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Exploring Scalable Computing Architectures for Interactions Analysis. - Taruna Seth; Chao Feng; Murali Ramanathan; Vipin Chaudhary (ICCCN, 2018)

Evaluating digital medicine ingestion data from seriously mentally ill patients with a Bayesian Hybrid Model. - Jonathan Knights; Zahra Heidary; Timothy Peters-Strickland; Murali Ramanathan (npj Digit. Medicine, 2019)