Correcting population stratification in genetic association studies using a phylogenetic approach. - Mingyao Li; Muredach P. Reilly; Daniel J. Rader; Li-San Wang (Bioinform., 2010)

MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data. - Gabriel H. Murillo; Na You; Xiaoquan Su; Wei Cui; Muredach P. Reilly; Mingyao Li; Kang Ning 001; Xinping Cui (Bioinform., 2016)

PennDiff: detecting differential alternative splicing and transcription by RNA sequencing. - Yu Hu 014; Jennie Lin; Jian Hu; Gang Hu; Kui Wang; Hanrui Zhang 004; Muredach P. Reilly; Mingyao Li (Bioinform., 2018)

Misalignment between COVID-19 hotspots and clinical trial sites. - Lauren Franks; Hao Liu 054; Mitchell S. V. Elkind; Muredach P. Reilly; Chunhua Weng; Shing M. Lee (J. Am. Medical Informatics Assoc., 2021)

A multi-use deep learning method for CITE-seq and single-cell RNA-seq data integration with cell surface protein prediction and imputation. - Justin Lakkis; Amelia Schroeder; Kenong Su; Michelle Y. Y. Lee; Alexander C. Bashore; Muredach P. Reilly; Mingyao Li (Nat. Mac. Intell., 2022)