Distinguishing the type of NOE for NMR protein Structure-Based Assignments. - Murodzhon Akhmedov; Bülent Çatay; Mehmet Serkan Apaydin (SIU, 2013)

A drug similarity network for understanding drug mechanism of action. - Nermin Pinar Karabulut; Murodzhon Akhmedov; Murat Cokol (J. Bioinform. Comput. Biol., 2014)

A Comparison of Heuristic Methods for the Prize-Collecting Steiner Tree Problem and Their Application in Genomics. - Murodzhon Akhmedov; Ivo Kwee; Roberto Montemanni (OR, 2015)

Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. - Murodzhon Akhmedov; Bülent Çatay; Mehmet Serkan Apaydin (J. Bioinform. Comput. Biol., 2015)

A divide and conquer matheuristic algorithm for the Prize-collecting Steiner Tree Problem. - Murodzhon Akhmedov; Ivo Kwee; Roberto Montemanni (Comput. Oper. Res., 2016)

A Fast Prize-Collecting Steiner Forest Algorithm for Functional Analyses in Biological Networks. - Murodzhon Akhmedov; Alexander LeNail; Francesco Bertoni; Ivo Kwee; Ernest Fraenkel; Roberto Montemanni (CPAIOR, 2017)

PCSF: An R-package for network-based interpretation of high-throughput data. - Murodzhon Akhmedov; Amanda J. Kedaigle; Renan Escalante Chong; Roberto Montemanni; Francesco Bertoni; Ernest Fraenkel; Ivo Kwee (PLoS Comput. Biol., 2017)

cuRnet: an R package for graph traversing on GPU. - Vincenzo Bonnici; Federico Busato; Stefano Aldegheri; Murodzhon Akhmedov; Luciano Cascione; Alberto Arribas Carmena; Francesco Bertoni; Nicola Bombieri; Ivo Kwee; Rosalba Giugno (BMC Bioinform., 2018)

Correction to: cuRnet: an R package for graph traversing on GPU. - Vincenzo Bonnici; Federico Busato; Stefano Aldegheri; Murodzhon Akhmedov; Luciano Cascione; Alberto Arribas Carmena; Francesco Bertoni; Nicola Bombieri; Ivo Kwee; Rosalba Giugno (BMC Bioinform., 2018)