An iterative method for simulation of large scale modular systems using reduced order models. - Muruhan Rathinam; Linda R. Petzold (CDC, 2000)

Dynamic Iteration Using Reduced Order Models: A Method for Simulation of Large Scale Modular Systems. - Muruhan Rathinam; Linda R. Petzold (SIAM J. Numer. Anal., 2002)

A New Look at Proper Orthogonal Decomposition. - Muruhan Rathinam; Linda R. Petzold (SIAM J. Numer. Anal., 2003)

Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems. - Muruhan Rathinam; Linda R. Petzold; Yang Cao 001; Daniel T. Gillespie (Multiscale Model. Simul., 2005)

Trader behavior and hedging feedback in the stock pinning phenomena. - James A. Primbs; Muruhan Rathinam (ACC, 2006)

Reversible-equivalent-monomolecular tau: A leaping method for "small number and stiff" stochastic chemical systems. - Muruhan Rathinam; Hana El-Samad (J. Comput. Phys., 2007)

Interlaced Euler scheme for stiff systems of stochastic differential equations. - Ioana Cipcigan; Muruhan Rathinam (SAC, 2009)

Uniform Convergence of Interlaced Euler Method for Stiff Stochastic Differential Equations. - Ioana Cipcigan; Muruhan Rathinam (Multiscale Model. Simul., 2011)

SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks. - Patrick W. Sheppard; Muruhan Rathinam; Mustafa Khammash (Bioinform., 2013)

Tau leaping of stiff stochastic chemical systems via local central limit approximation. - Yushu Yang; Muruhan Rathinam (J. Comput. Phys., 2013)

Preconditioned Bayesian Regression for Stochastic Chemical Kinetics. - Alen Alexanderian; Francesco Rizzi; Muruhan Rathinam; Olivier P. Le Maître; Omar M. Knio (J. Sci. Comput., 2014)

Efficiency of the Girsanov Transformation Approach for Parametric Sensitivity Analysis of Stochastic Chemical Kinetics. - Ting Wang; Muruhan Rathinam (SIAM/ASA J. Uncertain. Quantification, 2016)

Convergence of Moments of tau Leaping Schemes for Unbounded Markov Processes on Integer Lattices. - Muruhan Rathinam (SIAM J. Numer. Anal., 2016)

Convergence, Stability, and Robustness of Multidimensional Opinion Dynamics in Continuous Time. - Serap Tay Stamoulas; Muruhan Rathinam (SIAM J. Control. Optim., 2018)

Estimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap Simulations. - Ankit Gupta 013; Muruhan Rathinam; Mustafa Khammash (SIAM J. Numer. Anal., 2018)

Homogenization of a Random Walk on a Graph in ℝd: An Approach to Predict Macroscale Diffusivity in Media with Finescale Obstructions and Interactions. - Preston Donovan; Muruhan Rathinam (Multiscale Model. Simul., 2020)

A Generalized Model of Flocking with Steering. - Guy A. Djokam; Muruhan Rathinam (SIAM J. Appl. Dyn. Syst., 2022)

Stochastic filtering of reaction networks partially observed in time snapshots. - Muruhan Rathinam; Mingkai Yu (J. Comput. Phys., 2024)