Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking Human Immunoglobulin A Antibody and Escape Mechanism in Noroviruses Upon Mutation. - Muslum Yildiz; Abdulkadir Kocak (J. Comput. Biol., 2019)

Accurate Binding Free Energy Method from End-State MD Simulations. - Ebru Akkus; Omer Tayfuroglu; Muslum Yildiz; Abdulkadir Kocak (J. Chem. Inf. Model., 2022)

Computational analysis of substrate recognition of Sars-Cov-2 Mpro main protease. - Hilal Sena Tasci; Ebru Akkus; Muslum Yildiz; Abdulkadir Kocak (Comput. Biol. Chem., 2023)

Benchmarking ANI potentials as a rescoring function and screening FDA drugs for SARS-CoV-2 Mpro. - Irem N. Zengin; M. Serdar Koca; Omer Tayfuroglu; Muslum Yildiz; Abdulkadir Kocak (J. Comput. Aided Mol. Des., 2024)