PRER: A patient representation with pairwise relative expression of proteins on biological networks. - Halil Ibrahim Kuru; Mustafa Buyukozkan; Öznur Tastan (PLoS Comput. Biol., 2021)

SGI: automatic clinical subgroup identification in omics datasets. - Mustafa Buyukozkan; Karsten Suhre; Jan Krumsiek (Bioinform., 2022)

maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines. - Kelsey Chetnik; Elisa Benedetti; Daniel P. Gomari; Annalise Schweickart; Richa Batra; Mustafa Buyukozkan; Zeyu Wang; Matthias Arnold; Jonas Zierer; Karsten Suhre; Jan Krumsiek (Bioinform., 2022)