Time-varying control and the robust performance of systems with structured norm-bounded perturbations. - Mustafa Khammash; Mohammed Dahleh (Autom., 1992)

Controller design for plants with structured uncertainty. - Munther A. Dahleh; Mustafa Hani Khammash (Autom., 1993)

Necessary and sufficient conditions for the robustness of time-varying systems with applications to sampled-data systems. - Mustafa Hani Khammash (IEEE Trans. Autom. Control., 1993)

Robust steady-state tracking. - Mustafa Hani Khammash (IEEE Trans. Autom. Control., 1995)

Synthesis of globally optimal controllers for robust performance to unstructured uncertainty. - Mustafa Hani Khammash (IEEE Trans. Autom. Control., 1996)

Robust performance: unknown disturbances and known fixed inputs. - Mustafa Hani Khammash (IEEE Trans. Autom. Control., 1997)

Robustness synthesis in l 1: A globally optimal solution. - Mustafa Khammash; Murti V. Salapaka; Timothy Van Voorhis (Robustness in Identification and Control, 1998)

Multi-objective MIMO optimal control design without zero interpolation. - Murti V. Salapaka; Mustafa Khammash (Robustness in Identification and Control, 1998)

Calcium homeostasis: a feedback control point of view. - Hana El-Samad; Mustafa Khammash; J. Goff (ACC, 2000)

Calcium Homeostasis: A Feedback Control Point of View. - Hana El-Samad; Mustafa Khammash (BIBE, 2000)

ℓ1 controller design for a high-order 5-pool irrigation canal system. - Pierre-Olivier Malaterre; Mustafa Khammash (CDC, 2000)

A new approach to the solution of the l1 control problem: the scaled-Q method. - Mustafa Khammash (IEEE Trans. Autom. Control., 2000)

Robust gain-scheduled aircraft longitudinal controller design using an H∞ approach. - Zhe Lin; Mustafa Khammash (ACC, 2001)

Optimal controller synthesis with multiple objectives. - Xin Qi 013; Mustafa Hani Khammash; Murti V. Salapaka (ACC, 2001)

Feedback regulation of the heat shock response in E. coli. - Hiroyuki Kurata; Hana El-Samad; Tau-Mu Yi; Mustafa Khammash; John Doyle 001 (CDC, 2001)

A MATLAB package for multiobjective control synthesis. - Xin Qi 013; Mustafa Hani Khammash; Murti V. Salapaka (CDC, 2001)

Comparison of different polynomial factorization approaches as an alternative to FIR approximation to solve the ℓ1 design problem. - Pierre-Olivier Malaterre; Mustafa Khammash (ECC, 2001)

Analysis of steady-state tracking errors in sampled-data systems with uncertainty. - Mustafa Hani Khammash; Liping Zou (Autom., 2001)

Robust synthesis in 1: a globally optimal solution. - Mustafa Khammash; Murti V. Salapaka; Timothy Van Voorhis (IEEE Trans. Autom. Control., 2001)

Robustness analysis of the heat shock response in E. coli. - Hana El-Samad; Mustafa Khammash; Hiroyuki Kurata; John Doyle 001 (ACC, 2002)

Integrated parameter and control design. - Xin Qi 013; Mustafa Hani Khammash; Murti V. Salapaka (ACC, 2002)

Structured optimal control with applications to network flow coordination. - Xin Qi 013; Murti V. Salapaka; Petros G. Voulgaris; Mustafa Khammash (ACC, 2003)

Model validation and robust stability analysis of the bacterial heat shock response using SOSTOOLS. - Hana El-Samad; Stephen Prajna; Antonis Papachristodoulou; Mustafa Khammash; John C. Doyle 001 (CDC, 2003)

Stochastic stability and its application to the analysis of gene regulatory networks. - Hana El-Samad; Mustafa Khammash (CDC, 2004)

Structured optimal and robust control with multiple criteria: a convex solution. - Xin Qi 013; Murti V. Salapaka; Petros G. Voulgaris; Mustafa Khammash (IEEE Trans. Autom. Control., 2004)

Repressilators and promotilators: loop dynamics in synthetic gene networks. - Hana El-Samad; Domitilla Del Vecchio; Mustafa Khammash (ACC, 2005)

Estimating radar positions using cooperative unmanned air vehicle teams. - Keith B. Purvis; Karl Johan Åström; Mustafa Khammash (ACC, 2005)

Stochastic Modeling and Analysis of Genetic Networks. - Mustafa Khammash; Hana El-Samad (CDC/ECC, 2005)

Coherence Resonance: A Mechanism for Noise Induced Stable Oscillations in Gene Regulatory Networks. - Hana El-Samad; Mustafa Khammash (CDC, 2006)

A reduced model solution for the chemical master equation arising in stochastic analyses of biological networks. - Brian Munsky; Mustafa Khammash (CDC, 2006)

Advanced Methods and Algorithms for Biological Networks Analysis. - Hana El-Samad; Stephen Prajna; Antonis Papachristodoulou; John Doyle 001; Mustafa Khammash (Proc. IEEE, 2006)

Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System. - Hiroyuki Kurata; Hana El-Samad; Rei Iwasaki; Hisao Ohtake; John C. Doyle 001; Irina Grigorova; Carol A. Gross; Mustafa Khammash (PLoS Comput. Biol., 2006)

Stochastic analysis of gene regulatory networks using finite state projections and singular perturbation. - Brian Munsky; Slaven Peles; Mustafa Khammash (ACC, 2007)

Online Control Strategies for Highly Coupled Cooperative UAVs. - Keith B. Purvis; Karl Johan Åström; Mustafa Khammash (ACC, 2007)

Systems biology and control - A tutorial. - Pablo A. Iglesias; Mustafa Khammash; Brian Munsky; Eduardo D. Sontag; Domitilla Del Vecchio (CDC, 2007)

A multiple time interval finite state projection algorithm for the solution to the chemical master equation. - Brian Munsky; Mustafa Khammash (J. Comput. Phys., 2007)

Computation of switch time distributions in stochastic gene regulatory networks. - Brian Munsky; Mustafa Khammash (ACC, 2008)

Using noise transmission properties to identify stochastic gene regulatory networks. - Brian Munsky; Mustafa Khammash (CDC, 2008)

Guest Editorial - Special Issue on Systems Biology. - Mustafa Khammash; Claire J. Tomlin; M. Vidyasagar (IEEE Trans. Autom. Control., 2008)

The Finite State Projection Approach for the Analysis of Stochastic Noise in Gene Networks. - Brian Munsky; Mustafa Khammash (IEEE Trans. Autom. Control., 2008)

Estimation and Optimal Configurations for Localization Using Cooperative UAVs. - Keith B. Purvis; Karl Johan Åström; Mustafa Khammash (IEEE Trans. Control. Syst. Technol., 2008)

Stability analysis of a class of biological network models. - Nader Motee; Bassam Bamieh; Mustafa Khammash (ACC, 2010)

Parameter identification of biological networks using extended Kalman filtering and χ2 criteria. - Gabriele Lillacci; Mustafa Khammash (CDC, 2010)

Model reduction of polynomial dynamical systems using differential algebra. - Nader Motee; Bassam Bamieh; Mustafa Khammash (CDC, 2010)

Performance limitations in autocatalytic networks in biology. - Nader Motee; Fiona Chandra; Bassam Bamieh; Mustafa Khammash; John C. Doyle 001 (CDC, 2010)

Modelling and analysis of gene regulatory network using feedback control theory. - Hana El-Samad; Mustafa Khammash (Int. J. Syst. Sci., 2010)

Analysis of Stochastic Strategies in Bacterial Competence: A Master Equation Approach. - Sandra H. Dandach; Mustafa Khammash (PLoS Comput. Biol., 2010)

Parameter Estimation and Model Selection in Computational Biology. - Gabriele Lillacci; Mustafa Khammash (PLoS Comput. Biol., 2010)

Stochastic strategies for survival: Bacterial competence in Bacillus Subtilis. - Sandra H. Dandach; Mustafa Khammash (ACC, 2011)

On the guaranteed accuracy of Polynomial Chaos Expansions. - Lorenzo Fagiano; Mustafa Khammash; Carlo Novara (CDC/ECC, 2011)

Model selection in stochastic chemical reaction networks using flow cytometry data. - Gabriele Lillacci; Mustafa Khammash (CDC/ECC, 2011)

Flow cytometry based state aggregation of a stochastic model of protein expression. - Anahita Mirtabatabaei; Francesco Bullo; Mustafa Khammash (CDC/ECC, 2011)

Quantitative characterization and analysis of the dynamic NF-kappaB response in microglia. - Patrick W. Sheppard; Xiaoyun Sun; John F. Emery; Rona G. Giffard; Mustafa Khammash (BMC Bioinform., 2011)

Computer control of gene expression: Robust setpoint tracking of protein mean and variance using integral feedback. - Corentin Briat; Mustafa Khammash (CDC, 2012)

Nonlinear stochastic model predictive control via regularized polynomial chaos expansions. - Lorenzo Fagiano; Mustafa Khammash (CDC, 2012)

Measurement noise distribution as a metric for parameter estimation in dynamical systems. - Gabriele Lillacci; Mustafa Khammash (CDC, 2012)

A spectral methods-based solution of the Chemical Master Equation for gene regulatory networks. - Michael Nip; João P. Hespanha 001; Mustafa Khammash (CDC, 2012)

Stability analysis of quasi-polynomial dynamical systems with applications to biological network models. - Nader Motee; Bassam Bamieh; Mustafa Khammash (Autom., 2012)

Simulation of stochastic systems via polynomial chaos expansions and convex optimization - Lorenzo Fagiano; Mustafa Khammash (CoRR, 2012)

Sensor fusion for tethered wings in airborne wind energy. - Lorenzo Fagiano; Khanh Huynh; Bassam Bamieh; Mustafa Khammash (ACC, 2013)

On control of tethered wings for airborne wind energy. - Lorenzo Fagiano; Aldo U. Zgraggen; Mustafa Khammash; Manfred Morari (ACC, 2013)

Integral population control of a quadratic dimerization process. - Corentin Briat; Mustafa Khammash (CDC, 2013)

Global identifiability of a simple linear model for gene expression analysis. - Uwe Helmke; Knut Hüper; Mustafa Khammash (CDC, 2013)

Direct numerical solution of algebraic Lyapunov equations for large-scale systems using Quantized Tensor Trains. - Michael Nip; João Pedro Hespanha; Mustafa Khammash (CDC, 2013)

Automatic control of tethered wings for airborne wind energy: Design and experimental results. - Lorenzo Fagiano; Aldo U. Zgraggen; Mustafa Khammash; Manfred Morari (ECC, 2013)

Efficient parameter identification for stochastic biochemical networks using a reduced-order realization. - Yutaka Hori; Mustafa Hani Khammash; Shinji Hara (ECC, 2013)

The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations. - Gabriele Lillacci; Mustafa Khammash (Bioinform., 2013)

SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks. - Patrick W. Sheppard; Muruhan Rathinam; Mustafa Khammash (Bioinform., 2013)

Spatial Stochastic Dynamics Enable Robust Cell Polarization. - Michael J. Lawson; Brian Drawert; Mustafa Khammash; Linda R. Petzold; Tau-Mu Yi (PLoS Comput. Biol., 2013)

Unbiased Estimation of Parameter Sensitivities for Stochastic Chemical Reaction Networks. - Ankit Gupta 013; Mustafa Khammash (SIAM J. Sci. Comput., 2013)

Detection of loading effects in bacterial stress response using biochemical stochasticity. - Gentian Buzi; Mustafa Khammash (CDC, 2014)

Optimization-based Lyapunov function construction for continuous-time Markov chains with affine transition rates. - Andreas Milias-Argeitis; Mustafa Khammash (CDC, 2014)

Plenary talk: Feedback control of living cells. - Mustafa Hani Khammash (MED, 2014)

Generic low-copy integral feedback for robust in-vivo adaptation. - Corentin Briat; Ankit Gupta 013; Mustafa Khammash (CoRR, 2014)

A Scalable Computational Framework for Establishing Long-Term Behavior of Stochastic Reaction Networks. - Ankit Gupta 013; Corentin Briat; Mustafa Khammash (PLoS Comput. Biol., 2014)

Direct Solution of the Chemical Master Equation Using Quantized Tensor Trains. - Vladimir A. Kazeev; Mustafa Khammash; Michael Nip; Christoph Schwab (PLoS Comput. Biol., 2014)

Overexpression of Heat Shock Protein 72 Attenuates NF-κB Activation Using a Combination of Regulatory Mechanisms in Microglia. - Patrick W. Sheppard; Xiaoyun Sun; Mustafa Khammash; Rona G. Giffard (PLoS Comput. Biol., 2014)

On Sensor Fusion for Airborne Wind Energy Systems. - Lorenzo Fagiano; Khanh Huynh; Bassam Bamieh; Mustafa Khammash (IEEE Trans. Control. Syst. Technol., 2014)

Automatic Crosswind Flight of Tethered Wings for Airborne Wind Energy: Modeling, Control Design, and Experimental Results. - Lorenzo Fagiano; Aldo U. Zgraggen; Manfred Morari; Mustafa Khammash (IEEE Trans. Control. Syst. Technol., 2014)

Adaptive Model Predictive Control of an optogenetic system. - Andreas Milias-Argeitis; Mustafa Khammash (CDC, 2015)

Sign properties of Metzler matrices with applications. - Corentin Briat; Mustafa Khammash (CoRR, 2015)

Stochastic Description of Biochemical Networks. - João Pedro Hespanha; Mustafa Khammash (Encyclopedia of Systems and Control, 2015)

Identification and Control of Cell Populations. - Mustafa Khammash; John Lygeros (Encyclopedia of Systems and Control, 2015)

Robust ergodicity and tracking in antithetic integral control of stochastic biochemical reaction networks. - Corentin Briat; Mustafa Khammash (CDC, 2016)

A molecular implementation of the least mean squares estimator. - Christoph Zechner; Mustafa Khammash (CDC, 2016)

Approximate filtering distributions for characterizing input-output behavior of biochemical networks. - Christoph Zechner; Mustafa Khammash (ECC, 2016)

Interval peak-to-peak observers for continuous- and discrete-time systems with persistent inputs and delays. - Corentin Briat; Mustafa Khammash (Autom., 2016)

Implementation Considerations, Not Topological Differences, Are the Main Determinants of Noise Suppression Properties in Feedback and Incoherent Feedforward Circuits. - Gentian Buzi; Mustafa Khammash (PLoS Comput. Biol., 2016)

Finding the steady-state solution of the chemical master equation. - Ankit Gupta 013; Mustafa Khammash (CCTA, 2017)

Challenges at the interface of control engineering and synthetic biology. - Harrison Steel; Gabriele Lillacci; Mustafa Khammash; Antonis Papachristodoulou (CDC, 2017)

Parameter inference for stochastic single-cell dynamics from lineage tree data. - Irena Kuzmanovska; Andreas Milias-Argeitis; Jan Mikelson; Christoph Zechner; Mustafa Khammash (BMC Syst. Biol., 2017)

Robust and structural ergodicity analysis of stochastic biomolecular networks involving synthetic antithetic integral controllers. - Corentin Briat; Mustafa Khammash (CoRR, 2017)

Stability analysis of LPV systems with piecewise differentiable parameters. - Corentin Briat; Mustafa Khammash (CoRR, 2017)

Simple interval observers for linear impulsive systems with applications to sampled-data and switched systems. - Corentin Briat; Mustafa Khammash (CoRR, 2017)

Variance reduction for antithetic integral control of stochastic reaction networks. - Corentin Briat; Ankit Gupta 013; Mustafa Khammash (CoRR, 2017)

Variance reduction in stochastic gene expression under integral feedback control. - Corentin Briat; Ankit Gupta 013; Mustafa Khammash (CDC, 2018)

In-Silico Proportional-Integral Moment Control of Stochastic Reaction Networks with Applications to Gene Expression (with Dimerization). - Corentin Briat; Mustafa Khammash (CoRR, 2018)

Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks. - Ankit Gupta 013; Mustafa Khammash (SIAM J. Appl. Dyn. Syst., 2018)

Estimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap Simulations. - Ankit Gupta 013; Muruhan Rathinam; Mustafa Khammash (SIAM J. Numer. Anal., 2018)

A linear constrained integral feedback for a class of reaction systems with absolute concentration robustness. - Daniele Cappelletti; Ankit Gupta 013; Mustafa Khammash (CDC, 2019)

Optimal Parameter Tuning of Feedback Controllers with Application to Biomolecular Antithetic Integral Control. - Maurice Filo; Mustafa Khammash (CDC, 2019)

An antithetic integral rein controller for bio-molecular networks. - Ankit Gupta 013; Mustafa Khammash (CDC, 2019)

Cybergenetics: Theory and Methods for Genetic Control System. - Mustafa Khammash; Mario di Bernardo; Diego di Bernardo (CDC, 2019)

Bayesian Parameter Estimation for Stochastic Reaction Networks from Steady-State Observations. - Ankit Gupta 013; Mustafa Khammash; Guido Sanguinetti (CMSB, 2019)

Quantification of loading effects in interconnections of stochastic reaction networks. - Ankit Gupta 013; Patrik Dürrenberger; Mustafa Khammash (ECC, 2019)

Stochastic filters based on hybrid approximations of multiscale stochastic reaction networks. - Zhou Fang; Ankit Gupta 013; Mustafa Khammash (CDC, 2020)

Likelihood-free nested sampling for parameter inference of biochemical reaction networks. - Jan Mikelson; Mustafa Khammash (PLoS Comput. Biol., 2020)

Ergodicity Analysis and Antithetic Integral Control of a Class of Stochastic Reaction Networks with Delays. - Corentin Briat; Mustafa Khammash (SIAM J. Appl. Dyn. Syst., 2020)

Fundamental Limits and Tradeoffs in Autocatalytic Pathways. - Milad Siami; Nader Motee; Gentian Buzi; Bassam Bamieh; Mustafa Khammash; John C. Doyle 001 (IEEE Trans. Autom. Control., 2020)

Stability and Control of Biomolecular Circuits through Structure. - Fangzhou Xiao; Mustafa Khammash; John C. Doyle 001 (ACC, 2021)

Design of a synthetic integral feedback circuit: dynamic analysis and DNA implementation. - Corentin Briat; Christoph Zechner; Mustafa Khammash (CoRR, 2021)

DeepCME: A deep learning framework for computing solution statistics of the chemical master equation. - Ankit Gupta 013; Christoph Schwab; Mustafa Khammash (PLoS Comput. Biol., 2021)

Ergodicity, Output-Controllability, and Antithetic Integral Control of Uncertain Stochastic Reaction Networks. - Corentin Briat; Mustafa Khammash (IEEE Trans. Autom. Control., 2021)

In-Silico Proportional-Integral Moment Control of Stochastic Gene Expression. - Corentin Briat; Mustafa Khammash (IEEE Trans. Autom. Control., 2021)

Padé SSA: A frequency domain method for estimating the dynamics of stochastic reaction networks. - Ankit Gupta 013; Mustafa Khammash (CDC, 2022)

Continuous and Sampled-Data H∞ Control of Linear Stochastic Reaction Networks. - Corentin Briat; Mustafa Khammash (CDC, 2022)

Continuous-Time and Sampled-Data Optimal Control of Linear Stochastic Reaction Networks. - Corentin Briat; Mustafa Khammash (CDC, 2022)

Exploiting the Nonlinear Structure of the Antithetic Integral Controller to Enhance Dynamic Performance. - Maurice Filo; Sant Kumar; Stanislav Anastassov; Mustafa Khammash (CDC, 2022)

On the Innocuousness of Deterministic p-type Antithetic Integral Controllers Arising in Integral Rein Control. - Corentin Briat; Mustafa Khammash (CoRR, 2022)

Stochastic filtering for multiscale stochastic reaction networks based on hybrid approximations. - Zhou Fang; Ankit Gupta 013; Mustafa Khammash (J. Comput. Phys., 2022)

Cybergenetics: Theory and Applications of Genetic Control Systems. - Mustafa Hani Khammash (Proc. IEEE, 2022)

Systems and Synthetic Biology. - Mustafa Hani Khammash; Jörg Stelling (Proc. IEEE, 2022)

Convergence of Regularized Particle Filters for Stochastic Reaction Networks. - Zhou Fang; Ankit Gupta 013; Mustafa Khammash (SIAM J. Numer. Anal., 2023)

Noise in Biomolecular Systems: Modeling, Analysis, and Control Implications. - Corentin Briat; Mustafa Khammash (Annu. Rev. Control. Robotics Auton. Syst., 2023)

Effective filtering approach for joint parameter-state estimation in SDEs via Rao-Blackwellization and modularization. - Zhou Fang; Ankit Gupta 013; Mustafa Khammash (CDC, 2024)

SynthEvo: A Gradient-Guided Evolutionary Approach for Synthetic Circuit Design. - Nicolò Rossi; Ankit Gupta 013; Mustafa Khammash (CDC, 2024)

Cascaded Antithetic Integral Feedback for Enhanced Stability and Performance. - Armin Mohammadie Zand; Ankit Gupta 013; Mustafa Khammash (IEEE Control. Syst. Lett., 2024)