Annotating proteins by mining protein interaction networks. - Mustafa Kirac; Gultekin Özsoyoglu; Jiong Yang (ISMB (Supplement of Bioinformatics), 2006)

Task-Oriented Integrated Use of Biological Web Data Sources. - Mustafa Kirac; Ali Cakmak 001; Gultekin Özsoyoglu (SSDBM, 2006)

Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways. - Ali Cakmak 001; Mustafa Kirac; Marc R. Reynolds; Z. Meral Özsoyoglu; Gultekin Özsoyoglu (SSDBM, 2007)

Protein Function Prediction Based on Patterns in Biological Networks. - Mustafa Kirac; Gultekin Özsoyoglu (RECOMB, 2008)

PathCase: pathways database system. - Brendan Elliott; Mustafa Kirac; Ali Cakmak 001; Gökhan Yavas; Stephen Mayes; En Cheng; Yuan Wang; Chirag Gupta; Gultekin Özsoyoglu; Z. Meral Özsoyoglu (Bioinform., 2008)

PopulusLog: People information database. - Ali Cakmak 001; Mustafa Kirac; Gultekin Özsoyoglu (ISCIS, 2009)

Corrigendum for Elliott, B. et al., 'PathCase pathways database system', Bioinformatics 2008, 24(21) 2526-2533. - Brendan Elliott; Mustafa Kirac; Ali Cakmak 001; Gökhan Yavas; Stephen Mayes; En Cheng; Yuan Wang; Chirag Gupta; Gultekin Özsoyoglu; Z. Meral Özsoyoglu (Bioinform., 2009)

Link and Annotation Prediction Using Topology and Feature Structure in Large Scale Social Networks. - Burak Isikli; Fatih Erdogan Sevilgen; Mustafa Kirac (BDAS, 2014)