Opening mechanism of adenylate kinase can vary according to selected molecular dynamics force field. - Hulya Unan; Ahmet Yildirim; Mustafa Tekpinar (J. Comput. Aided Mol. Des., 2015)

Only a Subset of Normal Modes is Sufficient to Identify Linear Correlations in Proteins. - Mustafa Tekpinar; Ahmet Yildirim (J. Chem. Inf. Model., 2018)

Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus. - Mustafa Tekpinar; Bertrand Néron; Marc Delarue (J. Chem. Inf. Model., 2021)

Correction to "Extracting Dynamical Correlations and Identifying Key Residues for Allosteric Communication in Proteins by correlationplus". - Mustafa Tekpinar; Bertrand Néron; Marc Delarue (J. Chem. Inf. Model., 2021)

Building Quantitative Bridges between Dynamics and Sequences of SARS-CoV-2 Main Protease and a Diverse Set of Thirty-Two Proteins. - Ahmet Yildirim; Mustafa Tekpinar (J. Chem. Inf. Model., 2023)