scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets. - Musu Yuan; Liang Chen; Minghua Deng (Bioinform., 2022)

Clustering single-cell multi-omics data with MoClust. - Musu Yuan; Liang Chen; Minghua Deng (Bioinform., 2023)

scPLAN: a hierarchical computational framework for single transcriptomics data annotation, integration and cell-type label refinement. - Qirui Guo; Musu Yuan; Lei Zhang; Minghua Deng (Briefings Bioinform., 2024)

Continually adapting pre-trained language model to universal annotation of single-cell RNA-seq data. - Hui Wan; Musu Yuan; Yiwei Fu; Minghua Deng (Briefings Bioinform., 2024)

SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data. - Musu Yuan; Hui Wan; Zihao Wang; Qirui Guo; Minghua Deng (Briefings Bioinform., 2024)

Improving tree probability estimation with stochastic optimization and variance reduction. - Tianyu Xie 001; Musu Yuan; Minghua Deng; Cheng Zhang (Stat. Comput., 2024)