An Auto-Encoder to Reconstruct Structure with Cryo-EM Images via Theoretically Guaranteed Isometric Latent Space, and Its Application for Automatically Computing the Conformational Pathway. - Kimihiro Yamazaki; Yuichiro Wada; Atsushi Tokuhisa; Mutsuyo Wada; Takashi Katoh; Yuhei Umeda; Yasushi Okuno; Akira Nakagawa (MICCAI (1), 2023)

Deep Mapper: Efficient Visualization of Plausible Conformational Pathways. - Ziyad Oulhaj; Yoshiyuki Ishii; Kento Ohga; Kimihiro Yamazaki; Mutsuyo Wada; Yuhei Umeda; Takashi Katoh; Yuichiro Wada; Hiroaki Kurihara (ECAI, 2024)

Investigating self-supervised image denoising with denaturation. - Hiroki Waida; Kimihiro Yamazaki; Atsushi Tokuhisa; Mutsuyo Wada; Yuichiro Wada (Neural Networks, 2025)