PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. - Florent E. Angly; Beltran Rodriguez-Brito; David Bangor; Pat McNairnie; Mya Breitbart; Peter Salamon; Ben Felts; James Nulton; Joseph Mahaffy; Forest Rohwer (BMC Bioinform., 2005)

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries. - Yanan Yu; Mya Breitbart; Pat McNairnie; Forest Rohwer (BMC Bioinform., 2006)

Phage Eco-Locator: a web tool for visualization and analysis of phage genomes in metagenomic data sets. - Ramy K. Aziz; Bhakti Dwivedi; Mya Breitbart; Robert A. Edwards (BMC Bioinform., 2011)

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity. - Bhakti Dwivedi; Robert Schmieder; Dawn B. Goldsmith; Robert A. Edwards; Mya Breitbart (BMC Bioinform., 2012)