Tximeta: Reference sequence checksums for provenance identification in RNA-seq. - Michael I. Love; Charlotte Soneson; Peter F. Hickey; Lisa K. Johnson; N. Tessa Pierce; Lori A. Shepherd; Martin Morgan; Rob Patro (PLoS Comput. Biol., 2020)

Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets. - Daniel M. Portik; C. Titus Brown; N. Tessa Pierce-Ward (BMC Bioinform., 2022)

Ten simple rules and a template for creating workflows-as-applications. - Michael J. Roach 001; N. Tessa Pierce-Ward; Radoslaw Suchecki; Vijini Mallawaarachchi; Bhavya Nalagampalli Papudeshi; Scott A. Handley; C. Titus Brown; Nathan S. Watson-Haigh; Robert A. Edwards (PLoS Comput. Biol., 2022)

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. - Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga B. Botvinnik; Phillip Brooks; Daniel Dsouza; Gautier Laurent; Mahmudur Rahman Hera; et al. (J. Open Source Softw., 2024)

LINgroups as a Robust Principled Approach to Compare and Integrate Multiple Bacterial Taxonomies. - Reza Mazloom; N. Tessa Pierce-Ward; Parul Sharma; Leighton Pritchard; C. Titus Brown; Boris A. Vinatzer; Lenwood S. Heath (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)