The SGN comparative map viewer. - Lukas A. Mueller; Adri A. Mills; Beth Skwarecki; Robert M. Buels; Naama Menda; Steven D. Tanksley (Bioinform., 2008)

solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database. - Isaak Y. Tecle; Naama Menda; Robert M. Buels; Esther van der Knaap; Lukas A. Mueller (BMC Bioinform., 2010)

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. - Sook Jung; Naama Menda; Seth Redmond; Robert M. Buels; Maren Friesen; Yuri R. Bendaña; Lacey-Anne Sanderson; Hilmar Lapp; Taein Lee; Bob MacCallum; Kirstin E. Bett; Scott Cain; et al. (Database J. Biol. Databases Curation, 2011)

The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. - Aureliano Bombarely; Naama Menda; Isaak Y. Tecle; Robert M. Buels; Susan Strickler; Thomas Fischer-York; Anuradha Pujar; Jonathan Leto; Joseph Gosselin; Lukas A. Mueller (Nucleic Acids Res., 2011)

Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. - Elizabeth Arnaud; Laurel Cooper; Rosemary Shrestha; Naama Menda; Rex T. Nelson; Luca Matteis; Milko Skofic; Ruth Bastow; Pankaj Jaiswal; Lukas A. Mueller; Graham McLaren (KEOD, 2012)

From manual curation to visualization of gene families and networks across Solanaceae plant species. - Anuradha Pujar; Naama Menda; Aureliano Bombarely; Jeremy D. Edwards; Susan Strickler; Lukas A. Mueller (Database J. Biol. Databases Curation, 2013)

solGS: a web-based tool for genomic selection. - Isaak Y. Tecle; Jeremy D. Edwards; Naama Menda; Chiedozie Egesi; Ismail Y. Rabbi; Peter Kulakow; Robert Kawuki; Jean-Luc Jannink; Lukas A. Mueller (BMC Bioinform., 2014)

The Sol Genomics Network (SGN) - from genotype to phenotype to breeding. - Noé Fernández-Pozo; Naama Menda; Jeremy D. Edwards; Surya Saha; Isaak Y. Tecle; Susan R. Strickler; Aureliano Bombarely; Thomas Fisher-York; Anuradha Pujar; Hartmut Foerster; Aimin Yan; Lukas A. Mueller (Nucleic Acids Res., 2015)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. - Elizabeth Arnaud; Marie-Angélique Laporte; Soonho Kim; Céline Aubert; Sabina Leonelli; Berta Miro; Laurel Cooper; Pankaj Jaiswal; Gideon Kruseman; Rosemary Shrestha; Pier Luigi Buttigieg; Christopher J. Mungall; et al. (Patterns, 2020)

Post-composing ontology terms for efficient phenotyping in plant breeding. - Naama Menda; Bryan J. Ellerbrock; Christiano C. Simoes; Srikanth Kumar Karaikal; Christine Nyaga; Mirella Flores-Gonzalez; Isaak Y. Tecle; David Lyon; Afolabi Agbona; Paterne A Agre; Prasad Peteti; Violet Akech; et al. (Database J. Biol. Databases Curation, 2025)